Conserved Protein Domain Family
BAF250_C

?
pfam12031: BAF250_C (this model, PSSM-Id:371856 is obsolete and has been replaced by 463439)
SWI/SNF-like complex subunit BAF250/Osa
This entry represents the mammalian BAF250a/b and its homolog osa from fruit flies. They are part of the SWI/SNF-like ATP-dependent chromatin remodelling complex that regulates gene expression through regulating nucleosome remodelling. In humans there are two BAF250 isoforms, BAF250a/ARID1a and BAF250b/ARID1b. BAF250a/b may be E3 ubiquitin ligases that target histone H2B.
Statistics
?
PSSM-Id: 371856
Aligned: 21 rows
Threshold Bit Score: 333.114
Created: 1-May-2019
Updated: 18-Jul-2019
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EEN46314      582 QLARRCICISNIFRSLSFIPGNDLEMSKHPGLLLALGKLLLLHHNHPERSQ-------AVRTYEKD-------------E 641  Florida lancelet
4_pfamImport    1 DLAQRALALSNILRGFSFVPGSDLMMAKNEALLYIIGRFLRLNVTERKISSkrpvvvlDAEELKKEikkvsadekkvrdK 80  
EFX70974     1490 ALARRALALSNIFRSLSFVPSNETELAKNSTLLVIVGKILLLHHDHPLRSS-------HQKNYDRE-------------E 1549 common water ...
EDX15823      227 SLARRCIALSNIFRNLTFVPGNETVLAKSTRFLAVLGRLLLLNHEHLRRTP-------KTRNYDRE-------------E 286  Drosophila si...
EFA11411     1628 NIGKRCVCISNILRSLTFIPGNESEFSRSSTFLAIVGKLLLLHHEHPPRTQ-------KTRNYDRE-------------E 1687 red flour beetle
XP_001946583 1720 SIGKRCVCISNILRNLSFVPGNELEFAKSGPFLGLVGKLLLTHHEHPLRSS-------KTRNYDKA-------------D 1779 pea aphid
EKC20059     2247 ELGRRCVCISNIFRSLSSIPSNHLELSKHPGLMYTLGKLLMLNHRHLPRNT-------TRRKFDRD-------------D 2306 Pacific oyster
XP_018653283 2032 arAVRCLCVSTVLRNLSFMNTVERQLSKQKGVLALIGRLLLFGHEHVGENDtwqvveeKAHSLESS-------------- 2097 Schistosoma m...
2_pfamImport    1 SLTHRALALSNIVRGLSFCHGNEQALAAHPDLMRILGKFLKLCVRERLVKKvk--------ppKPDdstpcssqalvapP 72  
EGT37977     1278 ELSHRALALSNILRGFSFVPGSDALMARNEALLFIIGRFMRLNVIERKISSkrpgvvlDSEELKKEpkpltagekqakeK 1357 Caenorhabditi...
EEN46314      642 S----EIDavp------------ykREEWWWD-CLELLRENVLVILANIAGNMDLSIYPESISLPILDGLLHWTVCPAAC 704  Florida lancelet
4_pfamImport   81 AvlddVDA-----------------TATQMID-TTNQLRDDAFVMLTHMSVSLNIYDLPDSIAFPIYDGLLRWAVSRVPE 142 
EFX70974     1550 D----VDFasvdslga-sgsasskcETDWWWD-TLLALRENVLVLMANIAGQLDLSIYSEEIVRPVIDGLLHWAICPSAQ 1623 common water ...
EDX15823      287 D----TDFsdscs--------slqgEREWWWD-YLITIRENMLVAMANIAGHLELSRYDELIARPLIDGLLHWAVCPSAH 353  Drosophila si...
EFA11411     1688 D----ADFadscs--------slqgESEWWWD-FLIQIRENILVSIANISGQIDFNVYPEEIVRPILDGLLHWAICPSAT 1754 red flour beetle
XP_001946583 1780 Dd---TESlfncttttdadtiepgnDAKWWWD-YLDVVRENLLVSLANIAGYVDLSTFNEDISRPILDGLLHWAICPAAA 1855 pea aphid
EKC20059     2307 S----ELEdisdg-------hltqcDEEWWWE-YFSMLRENTLVIFANICGHLELKYYPEEICMPILDGLLHWAVCPSSC 2374 Pacific oyster
XP_018653283 2098 -------------------------FCAWWTPtWLEDMRENAMVLLVNVAGYLELIQFDESIVRPILEGLLHWITCSTSA 2152 Schistosoma m...
2_pfamImport   73 SlldaPDS-----------------AAALLQD-VAVQLREDAFTVLAHLSVVLDLYDMDSSVSYPIMDGLVHWAVSATAE 134 
EGT37977     1358 SvldeVDA-----------------TTAQMVE-TANQLRDDAFVMLTHMSVSLNLFDLPDAIAYPIYDGLLRWSVSRVPE 1419 Caenorhabditi...
EEN46314      705 AVDPFATvs--ekSQLSPQRLALEALAKLSILDNNVDLIQATPPFSR-LEKLNGHLVRWLGDKKQAVMREFSVVLLSNLA 781  Florida lancelet
4_pfamImport  143 ATDSTTP------APVSPRDYALEIMCKLVVIERNVDMLLSTGSWSR-IEQFVHILSRLLTMNEETHFREFAIVILNAFC 215 
EFX70974     1624 SQDPFSSfgphstSLLSPQRLSLETLSKLMVMDCNMDLILATPPFLR-LEKLVHFLTRSLCRTEDQVLREFAVNLLYYLS 1702 common water ...
EDX15823      354 GQDPFPScg--pnSVLSPQRLALEALCKLCVTDANVDLVIATPPFSR-LEKLCAVLTRHLCRNEDQVLREFSVNLLHYLA 430  Drosophila si...
EFA11411     1755 GQDPFASvg--psSLLSPQRLALESLCKLCVTNNNVDLVIATPPFSR-LERLCAVLTKHLCRSEDQVLREFSINLLHYLA 1831 red flour beetle
XP_001946583 1856 GQDPFPS------APLSPQRLALESLCKLCVTDNNVDLVIATPPYSR-LEKLANVLTRLLCRTEEQVLREFAVNLLHYLA 1928 pea aphid
EKC20059     2375 ATDPLPStt---tSVLSPQRLVLEALSKLCIHETNVDLLLATPPFDR-IVQLFSILTKLLANKSEPVTLEFALVLLSSLV 2450 Pacific oyster
XP_018653283 2153 SVDPFPGh-----RTLSPRRLALEALNRLCVHETNVDLLLSTPSDEKvLSRLFDRLATWLAVPEDQVTRELALSTMHYLA 2227 Schistosoma m...
2_pfamImport  135 ATDNLLH------GIISPRDYALEALCKLCVLERNVDLLLSTGPWPR-MERLVKVLSRLLPMHEDSHHREFAIVILNAMC 207 
EGT37977     1420 ATDSTTP------SPVSPRDYSLEIMCKMVVIERNVDMFLSTGSWSR-VEQLIHILSRLLTMNEETHYREFAIVILNALC 1492 Caenorhabditi...
EEN46314      782 QGDTI-TCRAIACQAGS-VSALIGFLEDAEATASAIAQNPRMMQMS-HNQEIGTSPDMM 837  Florida lancelet
4_pfamImport  216 VASEA-ICCICAMETQA-ISHLILFIDAADQSMHQVMQTLGMNALRdNPELMGTSVGML 272 
EFX70974     1703 AADSG-MARLIALHNNS-LALLVSFVEQAEANALAVASQHGIQALReNPESMGTSLDML 1759 common water flea
EDX15823      431 AADSA-MARTVALQSPC-ISYLVAFIEQAEQTALGVANQHGINYLReNPDSMGTSLDML 487  Drosophila simulans
EFA11411     1832 AADSS-MARTVASQTPC-VSLLVAFIEQAEQSALGVANQHGIGALRdNPDSMGTSLDML 1888 red flour beetle
XP_001946583 1929 AADSG-MARTIALQSPC-VSLLVAFIEQTEQNALSVVNTHGLNALRdNPDSMGTSLDML 1985 pea aphid
EKC20059     2451 QGDTS-CARAVAMQHPS-ISLLLDFLETAEHKAMTVANHHGINALRdNPEIMGTSLDML 2507 Pacific oyster
XP_018653283 2228 GGGTYiGTTMLADAKPCpISGLLSFIEAAEATTRRVIDQYGVQALQeRPELMGTSLEMV 2286 Schistosoma mansoni
2_pfamImport  208 LGSEA-VCWTTAVETNA-IHHLLNFIEISDHNMHTVMQSHGMGALRdNPEMMGTSVGML 264 
EGT37977     1493 IASEA-VCYICAMETST-IAHLILFIDSADQNMHQVMQAHGMTALRdNPELMGTSVGML 1549 Caenorhabditis brenneri
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap