Conserved Protein Domain Family
Membr_traf_MHD

?
pfam10540: Membr_traf_MHD (this model, PSSM-Id:371123 is obsolete)
Munc13 (mammalian uncoordinated) homology domain
Munc13 proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana, C. elegans, Drosophila melanogaster, mouse, rat and human, some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical.
Statistics
?
PSSM-Id: 371123
Aligned: 58 rows
Threshold Bit Score: 71.9234
Created: 2-May-2019
Updated: 18-Jul-2019
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ybcl:Ecym_2462 1075 DAISPLFDYLNSNLAIMATELNRSLLHKVMLQAWNTILNAADTLLLPNLSSarsmkkavssksmtl-------------- 1140 Eremotheciu...
XP_001481975     13 EAMMPLYNYLNQNLEVLAQYLTQEMLMKVMVAAWNVVVSSADELLLPKLASaktfqlstigsklsltstg-------tsg 85   Meyerozyma ...
Q5ABF8         1011 QSIQNLCDYLNMNLSILKGFLMNEIFMKTMVATWKNVVSAADELMLPKLSKakintesggtswq---------------- 1074 Candida alb...
EER31613       1052 ASIENLCDYLNMNLSILKEFLMDENFMKVMVETWKHVINSADELMLPNLSKakikaeggslsltssssssssshytntss 1131 Candida tro...
EMG46783       1026 ASLENLCDYLNMNLSILKEFLMDENFMNVMIITWKTVIKAADELMLPKLSKakintatsttsssasvslslsg-telnts 1104 Candida mal...
EGW34736        993 AAIEHLCDYLNMNLCVLKEFLKDEIFMKVMVATWNVVVTSADELVLPKLSKasvtlesggnswqav-------------- 1058 Spathaspora...
EDK43195       1045 ASIENLCDYLNLNLSVLKQYLCDDIFMEVMIATWKVVIKYADQLMLPKLSKakadvvdsnswqs---------------- 1108 Lodderomyce...
CCE40964        998 ESIENLCDYLNLNLSTLKTYLRDDLFMEVMLATWNIVIKCADELLLPKLSKakidvdsstwsa----------------- 1060 Candida par...
EEQ37340        885 EAMKPLYNYLNMNLSVLAQYLSKEILLRVMIEAWNVVVASADELLLPKLTSarvlrnstlgykrtsasggn-----iktg 959  Clavispora ...
Q6CVC9         1147 dSLVPLFDHLNENLTVLAQALPTALLHQIMLQVWNKILVAADALLLPPLQLasisssanseynfgsrgnrm--------- 1217 Kluyveromyc...
ybcl:Ecym_2462 1141 wenamniakgengadSyysyyysgsssssgtltsnggtgsgaiagliggpaaggqsdgqgsggllasgqaaeannynnNi 1220 Eremotheciu...
XP_001481975     86 wqsavstavasvsnsI--------------------------------------------------------------Gi 103  Meyerozyma ...
Q5ABF8         1075 --svssklatvslssI--------------------------------------------------------------Gi 1090 Candida alb...
EER31613       1132 wqsmtskfsnvslasI--------------------------------------------------------------Gi 1149 Candida tro...
EMG46783       1105 wqsmtskfsnvslssI--------------------------------------------------------------Gi 1122 Candida mal...
EGW34736       1059 ---------------------------------------------------------------------sskfanvslgi 1069 Spathaspora...
EDK43195       1109 ---mstklalvslttM--------------------------------------------------------------Nm 1123 Lodderomyce...
CCE40964       1061 ---msskfanvsistK--------------------------------------------------------------Am 1075 Candida par...
EEQ37340        960 wqsavssavanvtnsM--------------------------------------------------------------Ni 977  Clavispora ...
Q6CVC9         1218 ---------------------------------------------------------------sysgstrgsssvwdtav 1234 Kluyveromyc...
ybcl:Ecym_2462 1221 vgfGMTL-----------------------TQREVDIVFEWLRALCvDFFHNSGEGPPLQALKNQHYQNLLLVPVFYDKS 1277 Eremotheciu...
XP_001481975    104 sgfGRLL-----------------------TNNELETVFAWLTFLCfDFFHNNGNGPPIADLKNEHYQSLLLVPVYYDRD 160  Meyerozyma ...
Q5ABF8         1091 lgiDGPL-----------------------SINEIETVLGWLNFLC-TFFHHEGNGPPMEDLKTDQYQSLLLVPALYDQT 1146 Candida alb...
EER31613       1150 sgmDGPL-----------------------SIVEIETILQWLNFLC-SFFHNEGNGPPMEDLKTDKYQSLLLVPALYDQS 1205 Candida tro...
EMG46783       1123 lgmDGPLl----------------------SINEIETILGWLGLLC-QFFHNDGNGPSMEDLKTDQYQSLLLVPALYDQT 1179 Candida mal...
EGW34736       1070 lgiDSPL-----------------------SDIELETVLFWLSLLV-SFFHNEGNGPPMEDLKTEQYQSLLLIPALYDQG 1125 Spathaspora...
EDK43195       1124 fgiNSPL-----------------------SAIEVETVLRWLDLLM-EFFHNEGNGPPLEELKTDEYQALLLIPAFHDQN 1179 Lodderomyce...
CCE40964       1076 fgiDSPL-----------------------SIVEIETVLRWLYLLT-EFFHNEGNGPPMEDLKTEKYQSLLLIPAYYDQS 1131 Candida par...
EEQ37340        978 lgfGKTL-----------------------TNNEIETVISWLDFLCiDFFHNEGNGPPVEDLKTEQYQSLLLIPVYYDRD 1034 Clavispora ...
Q6CVC9         1235 sgfQKVLqkpgftgwsspfsnnsnynntvgTSLEVEIVFMWIDILCrDFFHNNGEGPPLDKLKNDQYQQLMLIASLFDNE 1314 Kluyveromyc...
ybcl:Ecym_2462 1278 VEEL 1281 Eremothecium cymbalariae DBVPG#7215
XP_001481975    161 IEFL 164  Meyerozyma guilliermondii ATCC 6260
Q5ABF8         1147 DEYL 1150 Candida albicans
EER31613       1206 DDYL 1209 Candida tropicalis MYA-3404
EMG46783       1180 DEYL 1183 Candida maltosa Xu316
EGW34736       1126 DDYL 1129 Spathaspora passalidarum NRRL Y-27907
EDK43195       1180 DEVL 1183 Lodderomyces elongisporus NRRL YB-4239
CCE40964       1132 EDEL 1135 Candida parapsilosis
EEQ37340       1035 TSFL 1038 Clavispora lusitaniae ATCC 42720
Q6CVC9         1315 TCEL 1318 Kluyveromyces lactis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap