Conserved Protein Domain Family
RR_TM4-6

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pfam06459: RR_TM4-6 (this model, PSSM-Id:368919 is obsolete and has been replaced by 461918)
Ryanodine Receptor TM 4-6
This region covers TM regions 4-6 of the ryanodine receptor 1 family.
Statistics
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PSSM-Id: 368919
Aligned: 58 rows
Threshold Bit Score: 182.927
Created: 4-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5RGQ4        4240 NMPDPTQFGI----HGDV-LEAEKAEISEMVVS--ADMVQmtgaGGGEKLETDVIMDlln-pavKKEGK--------HGA 4303 zebrafish
EDW46995      3172 LMRGPAPEQE----EEPVv-------EEETFGRalPPLP---------LEEPPGTVQafgldinKEENGmyk--vvvHES 3229 Drosophila s...
Q7PMK5        4459 LMRGPAQEE-----EEPIp-------EAEPSLRalPPLP---------LEEPPGTVQafgldisKEENGqyr--mapHES 4515 Anopheles ga...
Q17EB5        4471 LMRGSTQEE-----EEVIv-------EVEPSLRalPPLP---------TEEPPSTVQafgldisKEENGqyr--vqpHES 4527 yellow fever...
XP_016661950  4471 LMSGTQSEET----------TVEVVEEKSGSFRmlPALPS-------SGMDEPPSTLtdgnnmrKNSGS--------PDS 4525 pea aphid
EEZ99829      4379 LMRGPI---------EEP-AVLEIKEEEEKVGL--SRVLP----ALPSSEEQNTQMQafglditKEDNGqyk--maaHES 4440 red flour be...
CBY11776      4320 aIPEPTQEGIgtrhEDDVaEEDDEEEEEEEDIE---------------EEDAPVIGEvfg-itnKNDSTaafttyveDKS 4383 Oikopleura d...
21_pfamImport    1 EMPSPTQHGV----EDGVlDEDASD--ASDPLK---------------SDRDDLIVDv------KGKELmka--vvhTKR 51  
22_pfamImport    1 EMPSPTQHGV----EDGVlDEDASD--ASDPLK---------------SDRDDLIVDv------KGKELmka--vvhTKR 51  
XP_012544766  4485 LMRGPQ---V----EEPPp---EPTEEEKIGPRhlPALPP-------ADDTGQMQVSafglditKEDNGqiq--vkpHES 4545 domestic sil...
Q5RGQ4        4304 EPGLGDVCEILTETSA-PVEKKKSQ--------KVAAEKPESEP-EKA------------------------DTENQEKE 4349 zebrafish
EDW46995      3230 Pan----------------------------ssMEEGGESSPEDgAAA------------------------SGELVE-G 3256 Drosophila s...
Q7PMK5        4516 Palsp-------------------------sssIEETGESSPEDg---------------------------AAELTGEG 4543 Anopheles ga...
Q17EB5        4528 Palsp-------------------------sssVEETGESSPEDg---------------------------AGELSAEA 4555 yellow fever...
XP_016661950  4526 Khlks-------------------------nsvGDDKDETSAENhEKE------------------------DGVDGS-- 4554 pea aphid
EEZ99829      4441 P------------TTSqPSSAEGEGettpeedgEHPETETMEAPlSLS------------------------DLLGGEQA 4484 red flour be...
CBY11776      4384 WKGFGDQDFDEAARNlgme-----------ydeTAFNQQVEAQAiRDR------------------------QRRNSEIG 4428 Oikopleura d...
21_pfamImport   52 EAGFGDFSVEEAADTLsmia----------sdyDSGFNTPRATRiKKRrkllr-------------------kgrrlDAQ 102 
22_pfamImport   52 EAGFGDFSVEEAADTLsmia----------sdyDSGFNTPRATRiKKRrkllrkgrrlgqtssttssllsshYSEHPDAQ 121 
XP_012544766  4546 Pttst-------------------------pssGEEADASLDEGlEHS------------------------Ee------ 4570 domestic sil...
Q5RGQ4        4350 D--KTk---------EEAPEEPAa-EKPAP--KVKRGSSKDEspAFMASFFA-------GLEVYKTKMLNYLARNFYNLR 4408 zebrafish
EDW46995      3257 EphQEpisivdllggEAAKKAAQerQEAQKaqEAAMASIEAEakKSSSAPQEtpavhqiDFSQYTHRAVSFLARNFYNLK 3336 Drosophila s...
Q7PMK5        4544 VppGEqmtlvdllggEAAKRAAQerTEAQKaqEATLASIEAEskKASTETKEpaavhqiDFSKYTKKCVSYLARNFYNLK 4623 Anopheles ga...
Q17EB5        4556 AstEPpmtlvdllggEAAKRAAQerSEAQKaqEATLANIEAEqkKASAETKEpaavtqiDFSKYTKKAVSFLARNFYNLK 4635 yellow fever...
XP_016661950  4555 ---EQqasfvdllvgESARKDSIagPEVLAqqQAVMAAVEAEikQKNS-VENpsafstiDINAYTHRALSFLARNFYNLK 4630 pea aphid
EEZ99829      4485 KraAQ----------EKVEAQAAqqAVMQAieSESKQPVVTEpsAVSQ---I-------NFGAYSHRAVSFLARNFYNLK 4544 red flour be...
CBY11776      4429 SanKLksnakqsswnNFDSDAGTwqTYRNPclRPLKYTSIEEtkEEISPWKL-------KFQVFSTAFLAFFARNYYNFK 4501 Oikopleura d...
21_pfamImport  103 EasTLsrtmsfdmttADDSSCTPwqSCMSAcgRPARYKQQEIveDKNAAYLD-------CLNSFCMGTLGLFARNFYNFK 175 
22_pfamImport  122 EasTLsrtmsfdmttADDSSCTPwqSCMSAcgRPARYKQQEIetFKSTSH-----------------SQGLFARNFYNFK 184 
XP_012544766  4571 ---QRppslidllggEQAKKQALerIEAQAaqQAAMSAIEAEskKAVQGPASssalsqvDLSQYTRRAVSFLARNFYNLK 4647 domestic sil...
Q5RGQ4        4409 FLALFVAFAINFILLFYK-------------VTGD-FDDEEEE---------------------------------EGSw 4441 zebrafish
EDW46995      3337 YVALVLAFSINFMLLFYK-------------VTSFtEEADSSAeeelilgsgsgggad----itgsgfggsgdggsGDS- 3398 Drosophila s...
Q7PMK5        4624 YVALVLAFCINFMLLFYK-------------VTTLgDDEDGEGgsgeslmglgsglgsg-lgiletgsgggeggsgDGE- 4688 Anopheles ga...
Q17EB5        4636 YVALVLAFGINFMLLFYK-------------VTTLgDDEASEGsgddmmelasglgsglaeavleggsgdggsgdgGDE- 4701 yellow fever...
XP_016661950  4631 YVALVLAFCINFILLFYK-------------VTTLaDDLSDDGdvkefalgsag-----------isnddmddsnsTEI- 4685 pea aphid
EEZ99829      4545 YVALVLAFCINFMLLFYR-------------VSTLgDDAEGSGskgipdileg--------------saegsgagsGES- 4596 red flour be...
CBY11776      4502 SAALIISFLLNVILLSLRweseeelevdehvISEAeVLENT--------------------------------------- 4542 Oikopleura d...
21_pfamImport  176 ILALIITFIINFFLLFYK-------------VSG-------CDksywq------------------------sineDLD- 210 
22_pfamImport  185 ILALIITFIINFFLLFYK-------------VSG-------CDksywq------------------------sineDLD- 219 
XP_012544766  4648 YVALVLAFCINFVLLFYK-------------VSTLdGEKAEGSgigdiiagsg--------------sgqgsgsgdGSG- 4699 domestic sil...
Q5RGQ4        4442 ggeeeeaDEDEGGMEY----FILQESTGYM----APTLTFLAVLHTVISLLCVFGYYCLKVPLVV 4498 zebrafish
EDW46995      3399 -------EMEDEIPEL----VHVDEDFFYM----EHVLRIAACLHSLVSLAMLIAYYHLKVPLAI 3448 Drosophila sechellia
Q7PMK5        4689 -------GEEEDPPEK----VHVDEDFFYM----EHVLRIAAILHSLVSLCMLIAYYHLKVPLAI 4738 Anopheles gambiae str. PEST
Q17EB5        4702 -------GDGEDPLEK----VEVDEDFFYM----EHVMRVAALMHSLVSLCMLIAYYHLKVPLAI 4751 yellow fever mosquito
XP_016661950  4686 -------ADDEGVLEL----VHVNEDFFYM----AHVMRLAALLHSLASLAMLIAYYHLKVPLAI 4735 pea aphid
EEZ99829      4597 -------GEDDDPPEL----VHVDEDFYYM----AHVMRLAAILHSVVSLAMLIAYYNLKVPLAI 4646 red flour beetle
CBY11776      4543 -------LDDQEFGDQvnevLVFSD---WMfenvNEVFNWCAFLHTILALAKLVSYYELKVPLLI 4597 Oikopleura dioica
21_pfamImport  211 -------VDESER-------LVLVDTTLYM----EPALKIFRAIHFILSFSMLVSYYGLKVPLVI 257 
22_pfamImport  220 -------VDESER-------LVLVDTTLYM----EPALKIFRAIHFILSFSMLVSYYGLKVPLVI 266 
XP_012544766  4700 --------EEDDALEV----VHIDEDFFYM----EHVIKVAAVLHSIVSLAILIGYYHLKVPLAI 4748 domestic silkworm
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