5IDE,6MM9,5UN1


Conserved Protein Domain Family
Lig_chan

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pfam00060: Lig_chan (this model, PSSM-Id:365843 is obsolete and has been replaced by 459656)
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Ligand-gated ion channel
This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
Statistics
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PSSM-Id: 365843
Aligned: 46 rows
Threshold Bit Score: 180.969
Created: 18-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IDE_B 534 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHlednneeprdpQSP--PD-PPNEFGIFNSLWFSLGAFMQQGCDISPRSLSG 610  Norway rat
Q9VDH6 576 ETWFCLMGIILLTAPTLYAINRLAPLKEM-----------RI-------VGLSTVKSCFWYIFGALLQQGGMYLPTADSG 637  fruit fly
Q19693 136 EVWVITAAVILISGVIFLVMTNIIRKVYE-----------E---------MTVTPFESIWVFFSIFVQQGLPEQPRSWSC 195  Caenorhabditis elegans
Q9W365 520 EVWLSIVAALVGTAIMIWFMDKYSPYSSR-----------NNRqaYPyACREFTLRESFWFALTSFTPQGGGEAPKAISG 588  fruit fly
O04660 576 ALWLISLLSFFIIGLVVWVLEHRVNPDFD-----------GP--------GQYQLSTIFWFSFSIMVFA-PRERVLSFWA 635  thale cress
Q9SHV1 582 ELWLTTLVFFFLVGISVWTLEHRVNSDFR-----------GP--------ANYQASTIFWFAFSTMVFA-PRERVLSFGA 641  thale cress
Q9SDQ4 580 RLWCVVLVSFLVIAVVIWILEHRINEDFR-----------GP--------PRRQLSTMLLFSFSTLFKR-NQEDTISNLA 639  thale cress
Q7XJL2 593 PMWAVTASFFVIVGAAIWILEHRINDEFR-----------GP--------PRRQIITILWFTFSTMFFS-HRETTVSTLG 652  thale cress
Q8GXJ4 615 EMWAVTGGFFLFVGAMVWILEHRFNQEFR-----------GP--------PRRQLITIFWFSFSTMFFS-HRENTVSSLG 674  thale cress
Q9M8W7 542 SLWLASGAFFVLTGIVVWLVERSVNPEFQ-----------GS--------WGQQLSMMLWFGFSTIVFA-HREKLQKMSS 601  thale cress
5IDE_B 611 RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAED--LA-KQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMK 687  Norway rat
Q9VDH6 638 RLVVGFWWIVVIVLVTTYCGNLVAFLTFPKFQPGVDYLNQ--LE-DHKDIVQYGLRNGTFFERYVQSTTREDFKHYLERA 714  fruit fly
Q19693 196 RVLVALWWLASITLSATFTGSLVALFAVDKTNVPFQNIDQlvRLvKQGKFEIVMDENSFTRTEMIARSKLPVYRDLWHEM 275  Caenorhabditis elegans
Q9W365 589 RMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQ--LA-RQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKE 665  fruit fly
O04660 636 RVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNINS--LLaKGESVGYQSSFILGRLRDSGFSEASLVSYGSPEHC 713  thale cress
Q9SHV1 642 RSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITSMSS--LLhRGETVGYQRTSFILGKLNETGFPQSSLVPFDTAEE 719  thale cress
Q9SDQ4 640 RLVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDS--LRaSEVPIGYQAGTFTLEYLTYSLGMARSRLVPLDSTE 717  thale cress
Q7XJL2 653 RMVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIKGVDT--LI-SSTGRIGFQVGSFAENYMTDELNIASSRLVPLASP 729  thale cress
Q8GXJ4 675 RFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDS--LVtSNEPIGVQDGTFARNYLINELNILPSRIVPLKDEE 752  thale cress
Q9M8W7 602 RFLVIVWVFVVLILTSSYSANLTSTKTISRMQ----------------LNHQMVFGGSTTSMTAKLGSINAVEAYAQLLR 665  thale cress
5IDE_B 688 SAEPSVFTKTTADGVARVRKSKGKFAFlles------------------------------tmneYIEQRKPCDTMKVGG 737  Norway rat
Q9VDH6 715 KIYGSAQEEDIEAVKRGERINIDWRINlql--------------------------------ivqRHFEREKECHFALGR 762  fruit fly
Q19693 276 IVNHKVKYVNGIARGVAFVRANPGYALlgpmat--------------------------lnfyaySDCKVILFNDGILPV 329  Caenorhabditis elegans
Q9W365 666 LALNASKDFKKFRIWDYPIKEQYGHILlainssqpvadakegfanvdahenadyafihdsaeikyEITRNCNLTEVGEVF 745  fruit fly
O04660 714 DALLSKGQAEGGVSAVLMEVPYVRIF----------------------------------------LGQYCNKYKMVQTP 753  thale cress
Q9SHV1 720 CDELLKKGPKNGGVAAAFLGTPYVRLF---------------------------------------LGQYCNTYKMVEEP 760  thale cress
Q9SDQ4 718 EYEKALKLGPTNWGGVAAIVDELPYIE---------------------------------------LFLAERTGFKIVGE 758  thale cress
Q7XJL2 730 EEYANALQNGTVAAIVDERPYIDL---------------------------------------------FLSDYCKFAIR 764  thale cress
Q8GXJ4 753 QYLSALQRGPNAGGVAAIVDELPYIEVl-------------------------------------LTNSNCKFRTVGQEF 795  thale cress
Q9M8W7 666 DGTLNHVINEIPYLSILIGNYPN-----------------------------------------------DFVMTDRVTN 698  thale cress
5IDE_B 738 NLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKg-ECGAKDSGSKDkt----saLSLSNVAGVFYILV 812  Norway rat
Q9VDH6 763 ESFVDEQIAMIVPAQSAYLHLVNRHIKSMFRMGFIERWHQMNLPSagKCNGKSAQRQVtn----hkVNMDDMQGCFLVLL 838  fruit fly
Q19693 330 YLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKIn-ECNSTTIGPKSy-------LDLKRAQGAFWVFL 401  Caenorhabditis elegans
Q9W365 746 AEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLp-NCPLSEDQEG---------ITLESLGGVFIATL 815  fruit fly
O04660 754 FKVDGLGFVFPIGSPLVADISRAILKVEESNKANQLENAWFKPIDe-SCPDPLTNPDPnpsvsfrqLGFDSFWVLFLVAA 832  thale cress
Q9SHV1 761 FNVDGFGFVFPIGSPLVADVSRAILKVAESPKAVELEHAWFKKKEq-SCPDPVTNPDSnptvtaiqLGVGSFWFLFLVVF 839  thale cress
Q9SDQ4 759 PFMHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKT--NCAGKSNWNPEpn-----qLHLKSFKGLYLVC- 830  thale cress
Q7XJL2 765 GQEFTRCGWGFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLSksNCSSPHGSQSGds----eqLNVHSFWGMFLVVG 840  thale cress
Q8GXJ4 796 TRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHE---CSMQISNSEDs------qLSLKSFWGLFLICG 866  thale cress
Q9M8W7 699 TNGFGFMFQKGSDLVPKVSREIAKLRSLGMLKDMEKKWFQKLDSLnvHSNTEEVASTNdddeaskrFTFRELRGLFIIAG 778  thale cress
5IDE_B 813 GGL 815  Norway rat
Q9VDH6 839 LGF 841  fruit fly
Q19693 402 GGA 404  Caenorhabditis elegans
Q9W365 816 FGL 818  fruit fly
O04660 833 IVC 835  thale cress
Q9SHV1 840 VVC 842  thale cress
Q9SDQ4 831 IAI 833  thale cress
Q7XJL2 841 IAC 843  thale cress
Q8GXJ4 867 ITC 869  thale cress
Q9M8W7 779 AAH 781  thale cress
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