Conserved Protein Domain Family
DEXDc_FANCM

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cd18033: DEXDc_FANCM 
DEAH-box helicase domain of FANCM
Fanconi anemia group M (FANCM) protein is a DNA-dependent ATPase component of the Fanconi anemia (FA) core complex. It is required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. In complex with CENPS and CENPX, it binds double-stranded DNA (dsDNA), fork-structured DNA (fsDNA), and Holliday junction substrates. Its ATP-dependent DNA branch migration activity can process branched DNA structures such as a movable replication fork. This activity is strongly stimulated in the presence of CENPS and CENPX. In complex with FAAP24, it efficiently binds to single-strand DNA (ssDNA), splayed-arm DNA, and 3'-flap substrates. In vitro, on its own, it strongly binds ssDNA oligomers and weakly fsDNA, but does not bind to dsDNA. FANCM is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350791
Aligned: 13 rows
Threshold Bit Score: 277.667
Created: 18-Jul-2017
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      ####  #                ########                                  #              
Q9UT23      71 VSFRDYQFNIVQKalFENVLVALPTGLGKTFIAAVVMMnylrwfpksyIVFMAPTkPLVTQQMEACYKItgipksQTAEL 150  Schizosaccharomy...
EAW65782    89 CPVRDYQLHISRAalFCNTLVCLPTGLGKTFIAAVVMYnfyrwfpsgkVVFMAPTkPLVTQQIEACYQVmgipqsHMAEM 168  human
CCA17392   160 YQIREYQVSIAEKamYHNTLVSLPTGLGKTLIASVVMHnfyrwfpngkVIFLAPTkPLVTQQIQACYEInglpldQTAEI 239  Albugo laibachii...
AEE31807   113 VPLRDYQFAITKTalFSNTLVALPTGLGKTLIAAVVMYnyfrwfpqgkIVFAAPSrPLVMQQIEACHNIvgipqeWTIDL 192  thale cress
EGG02918    22 KPKRKYQYDIVAKalFNNCLVSLPTGLGKTFIAAVVMLnfyrwypqgkILFLAPTkPLVQQQIEACHSIagipsrDCLTL 101  Melampsora laric...
ABO97031    15 ISRRDYQFDMARNalLTNSLVCLPTGLGKTLIAAVVMYnyyrwfptgkIIFMAPTrPLVDQQMSACHTVvgipasDTIVL 94   Ostreococcus luc...
EFV56044   145 VPLRQYQFEIAAKalYYNTLVTLPTGLGKTLIAAVVMYnfyrwypsgkIVFMAPTkPLVAQQVEACYKImgvpneAVAEM 224  Trichinella spir...
731905      85 YEVRDYQYTIVHKslFQNTLCAIPTGMGKTFIASTVMLnyfrwtkkakIIFTAPTrPLVAQQIKACLGItgipsdQTAIL 164  Saccharomyces ce...
Q9HE09     109 QQYRNYQKEFCEQalFHNLLLALPTGLGKTFIAAVVMLnyfrwfpeskIIFLAPTkPLLLQQRVACSNVagmspgATAEL 188  Schizosaccharomy...
EGG22416   311 FPKRDYQYNIIKHaiYQNTLVCLPTGLGKTFIASVLMLnyyrwfptskIIFMVHTkPLVSQQIDAFYHTtgvprsSIIQF 390  Dictyostelium fa...
NP_650971   56 LPLRSYQQTIVQSalFKNTLVVLPTGLGKTFIAAVVMYnfyrwypkgkIVFMAPTrPLVSQQIHASQKImpfpseDTVQL 135  fruit fly
CAK91909    37 NEFRLYQFTIVQStfYYNTLVCLPTGLGKTFIASMAIInfsrwfpkgkIFFLAPTrPLVAQQHEAMKKFg-----IDGKL 111  Paramecium tetra...
Q7SDF3     153 GPIRDYQFSIVKNglFNNTLVALPTGLGKTFIAATIMLnyirwtktakAVFVAPTkPLASQQVQACLSIagiprsQATLL 232  Neurospora crass...
Feature 1                                                           #                          
Q9UT23     151 SGHvpvttrn---qyyqsrNVFFVTPQTILNdikhgi----cdrtriSCLVIDEAHRstGNYAYVEVVHLlslsnknFRI 223  Schizosaccharomy...
EAW65782   169 TGStqastrk---eiwcskRVLFLTPQVMVNdlsrga----cpaaeiKCLVIDEAHKalGNYAYCQVVRElvkytnhFRI 241  human
CCA17392   240 QGNvpkesrr---kwwkqkRIFFCTPQSFTNdvkegif---kdahqiVCLIIDEAHRarGNYAYCMAIQElkrytnwFRI 313  Albugo laibachii...
AEE31807   193 TGQtcpskra---flwkskRVFFVTPQVLEKdiqsgt----cltnylVCLVIDEAHRalGNYSYCVVVRElmavpiqLRI 265  thale cress
EGG02918   102 TGSvapakra---kvwdhkRVIFSTPQTVMNdltkgl----lkpqdvICVVVDEAHRatGAYAYCVVIKSlmrfnphFRV 174  Melampsora laric...
ABO97031    95 MGStkkddsgsrrdfwrekRLFFCTPHTVANdlesgd----ldakqiVCVVVDEAHHarGQYASAEVLRLlherkvrFRL 170  Ostreococcus luc...
EFV56044   225 TGCknpasrk---lewetkRMFFLTPQVFLNdlsrla----cpvtdvKCLVVDEAHRatGNHAYCQYGSH-------FRV 290  Trichinella spir...
731905     165 LDKsrknre----eiwankRVFFATPQVVENdlkrgv----ldpkdiVCLVIDEAHRatGSSAYTNVVKFidrfnssYRL 236  Saccharomyces ce...
Q9HE09     189 NGEvspdrrl---feyntkRVFFMTPQTLQNdlkehl----ldaksiICLIFDEAHRatGNHSYAQVMRAvlrsnshFRV 261  Schizosaccharomy...
EGG22416   391 TGTvnptkrs---elwekkRVFFLTPHILNNdirdkr----cdpsniSLIVMDESHRatKNAAYCQALREvtkytgqLRL 463  Dictyostelium fa...
NP_650971  136 TGQlprpkra---elwaskRVFFATPQVVHSdmleadgecsfpfgsiKLIVVDEAHRakGRYAYTQVADClmarnryFRM 212  fruit fly
CAK91909   112 SKNdrt----------yqsQIYFSTPQTLDNdlned------liqniVLVVLDEAHKgvGDYAYTNIVKRll---ynTRI 172  Paramecium tetra...
Q7SDF3     233 TGEtppvlre---dewatkRLFFMTPQTLMNdlskgy----adpksiVLLVIDEAHRatGDYAYVKVVEFlrrfsksFRI 305  Neurospora crass...
Feature 1          #                        
Q9UT23     224 LALSATpgnklEAIQNVIDslhISRIEIR 252  Schizosaccharomyces pombe 972h-
EAW65782   242 LALSATpgsdiKAVQQVITnllIGQIELR 270  human
CCA17392   314 VALSATpgskvEFIQEIITnlqISHIEAR 342  Albugo laibachii Nc14
AEE31807   266 LALTATpgsktQAIQGIIDnlqISTLEYR 294  thale cress
EGG02918   175 LALTATpgsdpERVQEVIDnlhIGHIEVR 203  Melampsora larici-populina 98AG31
ABO97031   171 LALTATpgqglDEVQKVVEtlrIGRIDFR 199  Ostreococcus lucimarinus CCE9901
EFV56044   291 LALSATpgsdlKMVQQVIQnllIAHLEIR 319  Trichinella spiralis
731905     237 LALTATpasdlEGVQEVVNnldISKIEIR 265  Saccharomyces cerevisiae S288c
Q9HE09     262 LGLTATpgsstASVQKVVDclhISKLIVR 290  Schizosaccharomyces pombe 972h-
EGG22416   464 VGLTASpgskkDTIQAVINnclASYMDIR 492  Dictyostelium fasciculatum
NP_650971  213 LALSATpgrtmEDVAAVCRnlyISNLQVR 241  fruit fly
CAK91909   173 IALSATpgnnlEQIQQVVAnlrIAKIELR 201  Paramecium tetraurelia
Q7SDF3     306 LALTATpgsslEGVQDVIDnlgISHVEIR 334  Neurospora crassa OR74A

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