Conserved Protein Domain Family
LGIC_ECD_nAChR_A7

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cd19020: LGIC_ECD_nAChR_A7 
extracellular domain of neuronal acetylcholine receptor subunit alpha 7 (CHRNA7)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit alpha 7 (alpha7), encoded by the CHRNA7 gene. Alpha7 subunits form a homo-pentameric channel, displays marked permeability to calcium ions and is a major component of brain nicotinic receptors that are blocked by, and highly sensitive to, alpha-bungarotoxin. This protein is ubiquitously expressed in both the central nervous system and in the periphery, in several tissues, including adrenal, small intestine, testis, and stomach. CHRNA7 is located in a region identified as a major susceptibility locus for juvenile myoclonic epilepsy and a chromosomal location involved in the genetic transmission of schizophrenia. It is also genetically linked to other disorders with cognitive deficits, including bipolar disorder, ADHD, Alzheimer's disease, and Rett syndrome. An evolutionarily recent partial duplication of CHRNA7 on chromosome 15 forms a new gene, CHRFAM7A or FAM7A, which encodes the protein dup-alpha7. This protein assembles with alpha7 subunits, results in fewer binding sites and is a dominant negative regulator of alpha7 nAChR function.
Statistics
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PSSM-Id: 349821
Aligned: 5 rows
Threshold Bit Score: 404.758
Created: 2-Oct-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
pentamerCys-loop
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of nicotinic acetylcholine receptor subunit alpha

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # #     ##      #                     # #        ## # ##   # ##   ###
OCT89534   52 PLTVYFGMSLMQIMDVDEKNQVLTTNIWLQMQWTDYYLQWnmsdYPGVKNVRFPDgQTWKPDILLYNsADERFDASFHTN 131 African clawed frog
P54131     47 PLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMTWTDHYLQWnaseYPGVKTVRFPDgQIWKPDILLYNsADERFDATFHTN 126 cattle
AAI62599   50 SLTVYFSMSLMQIMDVDEKNQVLTTNIWLQLYWYDYYLQWnaseYPGVTNVRFPDsQIWKPDILLYNsADERFDATFHTN 129 zebrafish
P22770     50 PLTVYFTLSLMQIMDVDEKNQVLTTNIWLQMYWTDHYLQWnvseYPGVKNVRFPDgLIWKPDILLYNsADERFDATFHTN 129 Japanese quail
Q05941     50 PLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWnmseYPGVKNVRFPDgQIWKPDILLYNsADERFDATFHTN 129 Norway rat
Feature 1      #         # # #   #                     #                                      
OCT89534  132 VLVNSSGHCQYLPPgIFKSSCYIDVRWFPFDIQKCNLKFGSWTYGGWSLDLQMIESDISEYISNGEWDLVGVPGKRSENY 211 African clawed frog
P54131    127 VLVNSSGHCQYLPPgIFKSSCYIDVRWFPFDVQQCKLKFGSWSYGGWSLDLQMQEADISGYIPNGEWDLVGVLGKRSEKF 206 cattle
AAI62599  130 VLVNSSGACQYLPPgIFKSTCYIDVRWFPFDLQRCDLKFGSWTYGGWSLDLQMIDADITGYIANGEWDLVEVPGRRNERF 209 zebrafish
P22770    130 VLVNSSGHCQYLPPgIFKSSCYIDVRWFPFDVQKCNLKFGSWTYGGWSLDLQMQEADISGYISNGEWDLVGIPGKRTESF 209 Japanese quail
Q05941    130 VLVNASGHCQYLPPgIFKSSCYIDVRWFPFDVQQCKLKFGSWSYGGWSLDLQMQEADISSYIPNGEWDLMGIPGKRNEKF 209 Norway rat
Feature 1                        #
OCT89534  212 YECCKEPYLDVTFTIIMRRR 231 African clawed frog
P54131    207 YECCKEPYPDVTFTVSIRRR 226 cattle
AAI62599  210 YDCCKEPYPDVTFTVVMRRR 229 zebrafish
P22770    210 YECCKEPYPDITFTVTMRRR 229 Japanese quail
Q05941    210 YECCKEPYPDVTYTVTMRRR 229 Norway rat

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