3GV6


Conserved Protein Domain Family
CD_Cbx6

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cd18648: CD_Cbx6 
Click on image for an interactive view with Cn3D
chromodomain of chromobox homolog 6
CHRomatin Organization Modifier (chromo) domain of chromobox homolog 6 (CBX6), a component of the PcG repressive complex PRC1, one of the two classes of PRCs. PcG proteins form large multiprotein complexes (PcG bodies) which are involved in the stable repression of genes involved in development, signaling or cancer via chromatin-based epigenetic modifications. Mammalian PRC1 includes canonical (cPRC1) and non-canonical complexes; cPRC1, contains four core subunits including one CBX protein (CBX2, CBX4, and CBX6-CBX8) that binds H3K27me3. CBX family members have different affinity for H3K27me3, with CBX7 having the highest binding capability. The human CBX proteins show distinct nuclear localizations and contribute differently to transcriptional repression. Some CBX proteins of the PRC1 complex have been implicated in transcriptional activation as well as in PRC1-independent roles in embryonic stem cells and in somatic cells.
Statistics
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PSSM-Id: 349295
Aligned: 5 rows
Threshold Bit Score: 83.9518
Created: 5-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ####                  ## #   # # ## ## ## ##            
3GV6_A         1 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERE 58  human
AAI18690       8 ERVFAAESIMKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIVAFEQKEREQE 65  tropical clawed frog
XP_015144165   8 ERVFAAEALLKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERE 65  chicken
AAH87122       8 EWVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERE 65  Norway rat
OWK58906       8 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERE 65  Bengalese finch

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