Conserved Protein Domain Family
VHS_Tom1L2

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cd16996: VHS_Tom1L2 
VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
TOM1-like protein 2 (Tom1L2) is a member of the Tom1 (Target of myb1) subfamily, characterized by the presence of a VHS (Vps27p/Hrs/Stam) domain in the N-terminal portion followed by a GAT (GGA and Tom) domain. They are novel regulators for post-Golgi trafficking and signaling. Studies in Tom1L2 hypomorphic mice suggest that Tom1L2 may play roles in immune responses and tumor suppression. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting.
Statistics
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PSSM-Id: 340793
Aligned: 5 rows
Threshold Bit Score: 298.489
Created: 26-May-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative intraprotein/interprotein binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          ##  #   #                                        ##           
Q5SRX1        12 PVGQCLEKATDGSLQSEDWTLNMEICDIINEtEEGPKDAIRALKKRLsgnrNYREVMLALTVLETCVKNCGHRFHLLVAN 91  house mouse
CDQ82982      12 PVGHCIERATDGSLQSEDWTLNMEICDIINEtEDGPKDAVRAMKKRLngnkNYREVMLALTVLETCVKNCGHRFHALITS 91  rainbow trout
Q68FJ8        12 PVGQCIEKATDGSLQSEDWTLNMEICDIINEtEEGPKDAMRALKKRLngnrNYREVMLALTVLETCVKNCGHRFHVQVTH 91  African clawed ...
NP_001257896  12 PVGQSLEKATDGSLQSEDWTLNMEICDIINEtEEGPKDAIRALKKRLngnkNYREVMLALTVLETCVKNCGHRFHVLVAN 91  chicken
XP_007903955  12 PVGQCIERATDGSLQAEDWTLNMEICDIINEtEEGPKDAIRALKKRLsgnkNYREVMLALTVLETCIKNCGHRFHVLVAS 91  elephant shark
Feature 1                                                                 
Q5SRX1        92 RDFIDSvLVKIISPKNnpPTIVQDKVLALIQAWADAFrsspDLTGVVHIYEELKRRG 148 house mouse
CDQ82982      92 RDFIDGvLVKIISPKNnpPTIVQDKVLSLIQAWADAFrsspDLTGVVQIYEELKRKG 148 rainbow trout
Q68FJ8        92 RDFIDGiLVKIISPKNnpPTIVQDKVLALIQAWADAFrsspDLTGVVHIYEELKRKG 148 African clawed frog
NP_001257896  92 RDFIDGvLVKIISPKNnpPTIVQDKVLALIQAWADAFrsspDLTGVVHIYEELKRKG 148 chicken
XP_007903955  92 RDFIDGvLVKIVLPKNnpPAIVQDKVLGLIQAWADAFrsspDLTGVVHIYEELKRKG 148 elephant shark

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