Conserved Protein Domain Family
FERM_F0_SHANK3

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cd17177: FERM_F0_SHANK3 
FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F0 sub-domain, found in SH3 and multiple ankyrin repeat domains protein 3 (SHANK3)
SHANK3, also termed proline-rich synapse-associated protein 2 (ProSAP2), is a postsynaptic density (PSD)-associated scaffolding protein at the excitatory synapse that interconnects neurotransmitter receptors and cell adhesion molecules by direct and indirect interactions with numerous other PSD-associated proteins. It is critical for synaptic plasticity and the trans-synaptic coupling between the reliability of presynaptic neurotransmitter release and postsynaptic responsiveness. It is a key component of a zinc-sensitive signaling system that regulates excitatory synaptic strength. Mutations in the SHANK3 synaptic scaffolding gene may lead to autism spectrum disorder and mental retardation, and the cause of human Phelan-McDermid syndrome (22q13.3 deletion syndrome) has been isolated to loss of function of one copy of the SHANK3 gene. SHANK3 contains an N-terminal F0 domain of FERM (Band 4.1, ezrin, radixin, moesin), six ankyrin (ANK) repeats, one SH3 (Src homology 3) domain, one PDZ (PSD-95, Dlg, and ZO-1/2, also known as DHR or GLGF) domain, and a C-terminal SAM (sterile alpha motif) domain. This family corresponds to the F0 domain that adopts a ubiquitin-like fold.
Statistics
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PSSM-Id: 340697
Aligned: 6 rows
Threshold Bit Score: 181.599
Created: 5-Jan-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
key conserved
Feature 1: key conserved lysines, 2 residue positions
Conserved feature residue pattern:[KR] [KR]Click to see conserved feature residue pattern help
Evidence:
  • Comment:2 (K27/R, K48/R Ub numbering) of the 7 lysines involved in chain linkage in ubiquitin (K6, K11, K27, K29, K33, K48, or K63, Ub numbering) are conserved in some members of this family; may have roles other than chain linkage

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #                           #                     
Q9BYB0          8 AVVVRVGIPDLQQTKCLRLDPAaPVWAAKQRVLCALNHSLQDALNYGLFQPPsRGRAGKFLDEERLLQEYPPNLDtPLPY 87   human
XP_018108324  190 AVIIRIGIPDLQQTKCLRLNPDaPVWVAKQRILCTLNHSLKDVLNYGLFQPAfNGRAGKFLDEERLLREYPPSLAtPVPY 269  African clawe...
XP_015139401  156 AIVVRIGIPDLQQTKCLRLNPDvPVWASKQRILCTLNHSLKDVLNYGLFQPAfNGRAGKFLDEERLLREYPLNPDtPVPY 235  chicken
XP_007909813   41 TIVIRVGIPDLQQTKCMRFNLDaPVWVSKQRILCTLNHTLKDVLNYGLFQPAfNGRAGKFLDEERLLREYPTPPDtPVPY 120  elephant shark
XP_006004639   78 SLVIRIGIPDLQQTKCLRLNPDaPVWISKQRILCTLNQSLKDVLNYGLFQPAsNGRAGKFLDEERLLREYPQPSNmPVPY 157  coelacanth
AAI54836       93 TLVVRIGIPDLQQTKCMKFNVEsPIWLSKQRILCTLNQSLKDVLNYGLFLPAyNGKAGKFLDEQRTLKEYPLPAVsPVPY 172  zebrafish
Feature 1                
Q9BYB0         88 LEFRYKR 94   human
XP_018108324  270 LEFRYKR 276  African clawed frog
XP_015139401  236 LEFRYKR 242  chicken
XP_007909813  121 LEFRYKK 127  elephant shark
XP_006004639  158 LEFRYKR 164  coelacanth
AAI54836      173 LEFRYKR 179  zebrafish

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