3IVF,2KC2


Conserved Protein Domain Family
FERM_F1_TLN

?
cd17090: FERM_F1_TLN 
FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in Talin and similar proteins
Talin is a cytoskeletal protein that activates integrins and couples them to cytoskeletal actin. Talin consists of an N-terminal head and a C-terminal rod. The talin head harbors a FERM (Band 4.1, ezrin, radixin, moesin) domain made up of F1, F2 and F3 domains, as well as an N-terminal region that precedes the FERM domain and has been referred to as the F0 domain. Both F0 and F1 domains have similar ubiquitin-like folds. This family corresponds to the F0 domain that is joined to the F1 domain in a novel fixed orientation by an extensive charged interface. It is required for maximal integrin-activation, by interacting with other FA components; no binding partner has yet been found for it.
Statistics
?
PSSM-Id: 340610
Aligned: 28 rows
Threshold Bit Score: 91.2449
Created: 26-Oct-2016
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
key conserved
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1: key conserved lysines, 2 residue positions
Conserved feature residue pattern:[KR] [KR]Click to see conserved feature residue pattern help
Evidence:
  • Comment:2 (K6/R, K33/R Ub numbering) of the 7 lysines involved in chain linkage in ubiquitin (K6, K11, K27, K29, K33, K48, or K63, Ub numbering) are conserved in this family; may have roles other than chain linkage

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              #                             #                                            
3IVF_A         86 RPLKIRMLd---GTVKTIMVDDskTVTDMLMTICARIGItnhDEYSLVRELmee-------------------------- 136  house mouse
Q54EW0        666 REIVVKFSd---KKVKSFVVDEqkTVSEITQEIGLKLGIknpEEFSLQLIVnnknnnnnnnsnnsstsssssssvnnsgi 742  Dictyostelium...
Q54EW0        217 HPLHQSTMl--dETIKTFVFDEskTVSEISMELAKKLQLkypEELSLKVQCee--------------------------- 267  Dictyostelium...
Q54K81         85 RPLKVRLMd---ETVKTMLVDDslTAGEILEIIGKRIGIknyEEFSLQTEG----------------------------- 132  Dictyostelium...
XP_001743667   86 RMLKIKLIdgseKSIRTLMIDEsqTLGAIVRHVCHRIGVqnfEEYSLVPEEtdtvasaklasvkr--------------- 150  Monosiga brev...
ELR16106       85 RPLKVKLLd---ETVKTVMIDEsePVSEIVEMIGKKMGLrnpEEFALQYNEedqppkegdtlkkk--------------- 146  Acanthamoeba ...
XP_009495535   83 RPQKVRLAd---ESEKTWLVDDslTIEQLTAFACEKLNIlnpDEYSFTTEKleaksreaav------------------- 140  Fonticula alba
KJE92331      496 RKLRVRTMa---GDVKTILVDEsaPCKQVLPLIASKMGMinyQEFGLSIYVvekvdkndprrrlynsfggvgkisk---- 568  Capsaspora ow...
XP_013760361  113 RPLRVELMd---GSIKTVMIDMsaPTKDLVALVCEKNGIanpAEFAFQVSLteeqkeaeakrqkevakir---------- 179  Thecamonas tr...
XP_013761452  120 QPLRILLMd---GSRKVIMCDVsqPVASLVEVICAKQNIsnpEEFSLMVAEdeltdeqraare----------------- 179  Thecamonas tr...
Feature 1                                                                                         
3IVF_A        137 -------------------------------------------------kkDDELNWLDhgRTLREQGVEEH-ETLLLRR 166  house mouse
Q54EW0        743 fdglnnsnvnnvfynsyivnssisnnsnsnsnsnilnnsndeqstststssSLGGIWLKpyQPLSEQSISPD-SKLLFKK 821  Dictyostelium...
Q54EW0        268 -------------------------------------------------edDGRGIWLSadLTLPEQGIDPLyTIFLLKR 298  Dictyostelium...
Q54K81        133 ---------------------------------------------------AAAGEWINhaQPLHEQGVPDD-AVVLLKK 160  Dictyostelium...
XP_001743667  151 --------------------------------------kkketlsdvrarlNEEEKWLQhdLTLLEQNVRPD-EVLVLRK 191  Monosiga brev...
ELR16106      147 -------------------------------------kkkdrpsvlkklpsAEAKGWLNptQTLVEQGLLDD-SVVTLKK 188  Acanthamoeba ...
XP_009495535  141 ------------------------------------------earrkglspPGDAWLIPs-KTLKEQDVDES-EVLIFRK 176  Fonticula alba
KJE92331      569 ---------------------------kvsktsmfssadeeaaitvqdedsLTVEHWLDmnESLAGQGIKMN-DVVFLKR 620  Capsaspora ow...
XP_013760361  180 ---------------------------------akagldtsfsgtkivskkGIDEDWLSadQTLAQCGVLPE-YSVLLKK 225  Thecamonas tr...
XP_013761452  180 ---------------------------------------kdlkrrrkrgepVSDDEWLKadMTLNAQGVTAD-TTLLLKK 219  Thecamonas tr...
Feature 1           
3IVF_A        167 KF 168  house mouse
Q54EW0        822 KF 823  Dictyostelium discoideum
Q54EW0        299 QF 300  Dictyostelium discoideum
Q54K81        161 KF 162  Dictyostelium discoideum
XP_001743667  192 KF 193  Monosiga brevicollis MX1
ELR16106      189 KF 190  Acanthamoeba castellanii str. Neff
XP_009495535  177 KF 178  Fonticula alba
KJE92331      621 RF 622  Capsaspora owczarzaki ATCC 30864
XP_013760361  226 KF 227  Thecamonas trahens ATCC 50062
XP_013761452  220 KF 221  Thecamonas trahens ATCC 50062

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap