1USS,4QLC,1UHM,2LSO,2RQP,1GHC


Conserved Protein Domain Family
Linker_histone

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pfam00538: Linker_histone (this model, PSSM-Id:334135 is obsolete and has been replaced by 459846)
Click on image for an interactive view with Cn3D
linker histone H1 and H5 family
Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.
Statistics
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PSSM-Id: 334135
Aligned: 276 rows
Threshold Bit Score: 49.4145
Created: 15-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1USS_A         7 SLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSklkTSSNFDYLFNSAIKKCVENGELVQPK-------GPSGIIKL 79  baker's yeast
NP_001333631  46 NPTMLHMVLEALKAREARQGTSVVAIKVYIQHKYPTv--DTTRFKYLLKQALETGVRRGLLTRPAhsk--akGATGSFKL 121 house mouse
XP_007665197  44 HPPTLSMVVEALRANREKQGTSVAAIKSYILLKYPAv--DQIRLKYLLKLALAKGIDHGILVRPPnst--akGATGRFKl 119 platypus
XP_007500321  68 HPSTLQMVTEALKARGDKHGTSVAAIKFYICRKYPAi--NMRRFRYLLKQALAKGISDGVLVRPRnst--vtGARGKFKL 143 gray short-tail...
XP_005053380  16 HPPTLQMVKEALRAHDEKKGASVVAIKRFILAKYPSv--DPIRLKYLLKQALSKGLSCGELVRPHnss--avGATGTFKL 91  collared flycat...
CAG06874      29 HPSTAIMVKEALKALDSRKGASSQAIQNYIKLKYPTv--DAVRLKHLVRGALKKGIESGALVRPAnst-ittGATGRFRV 105 spotted green p...
XP_004068573  50 HPPTAVMVKEALTALDSRKGASSQAIQSYIKQSYPSv--DVVRLKHLVRNALKKGMESGTLVRPAnaaaattGAQGKFKL 127 Japanese medaka
XP_003441294  36 HPSTAIMVKEALQALDSRKGVSSQAILKYITEKYPSv--DLARLKTLVRKNLKKGVENGTLVKPGnss--antATRRFRL 111 Nile tilapia
XP_005807343  40 HPSTFVMVKEALKALDSRKGVSSQAIQNYIKQKYPTv--DPARLKHLVRRLLKNGLLNGTLVRPVnat-vttGALGKFRL 116 southern platyfish
XP_007235422  47 HPSTMDMLKEALMELDSRKGVSAQAIRTFIKEKHPTv--DETRLKLMVRKALAKGLESGALVRPAkst--stGAQGRFRL 122 Mexican tetra
1USS_A        80 N 80  baker's yeast
NP_001333631 122 v 122 house mouse
XP_007665197 120 g 120 platypus
XP_007500321 144 v 144 gray short-tailed opossum
XP_005053380  92 A 92  collared flycatcher
CAG06874     106 t 106 spotted green pufferfish
XP_004068573 128 A 128 Japanese medaka
XP_003441294 112 A 112 Nile tilapia
XP_005807343 117 A 117 southern platyfish
XP_007235422 123 A 123 Mexican tetra
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