Conserved Protein Domain Family
RING-H2_RNF139

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cd16683: RING-H2_RNF139 (this model, PSSM-Id:319597 is obsolete and has been replaced by 438345)
RING finger, H2 subclass, found in RING finger protein 139 (RNF139) and similar proteins
RNF139, also known as translocation in renal carcinoma on chromosome 8 protein (TRC8), is an endoplasmic reticulum (ER)-resident multi-transmembrane protein that functions as a potent growth suppressor in mammalian cells, inducing G2/M arrest, decreased DNA synthesis and increased apoptosis. It is a tumor suppressor that has been implicated in a novel regulatory relationship linking the cholesterol/lipid biosynthetic pathway with cellular growth control. The mutation of RNF139 has been identified in families with hereditary renal (RCC) and thyroid cancers. RNF139 physically and functionally interacts with von Hippel-Lindau (VHL), which is part of an SCF related E3-ubiquitin ligase complex with "gatekeeper" function in renal carcinoma and is defective in most sporadic clear-cell renal cell carcinomas (ccRCC). It suppresses growth and functions with VHL in a common pathway. RNF139 also suppresses tumorigenesis through targeting heme oxygenase-1 for ubiquitination and degradation. Moreover, RNF139 is a target of Translin (TSN), a posttranscriptional regulator of genes transcribed by the transcription factor CREM-tau in postmeiotic male germ cells, suggesting a role of RNF139 in dysgerminoma. Furthermore, RNF139 physically and functionally interacts with von Hippel-Lindau (VHL), which is part of an SCF related E3-ubiquitin ligase complex with "gatekeeper" function in renal carcinoma and is defective in most sporadic clear-cell renal cell carcinomas (ccRCC). It suppresses growth and functions with VHL in a common pathway. In addition, RNF139 forms an integral part of a novel multi-protein ER complex, containing MHC I, US2, and signal peptide peptidase, which is associated with ER-associated degradation (ERAD) pathway. It is required for the ubiquitination of MHC class I molecules before dislocation from the ER. As a novel sterol-sensing ER membrane protein, RNF139 hinders sterol regulatory element-binding protein-2 (SREBP-2) processing through interaction with SREBP-2 and SREBP cleavage-activated protein (SCAP), regulating its own turnover rate via its E3 ubiquitin ligase activity. RNF139 shows two regions of similarity with the receptor for sonic hedgehog (SHH), Patched. The first region corresponds to the second extracellular domain of Patched, which is involved in binding SHH. The second region is a putative sterol-sensing domain (SSD). In addition, the C-terminal half of RNF139 contains a C3H2C3-type RING-H2 finger with E3-ubiquitin ligase activity in vitro.
Statistics
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PSSM-Id: 319597
Aligned: 7 rows
Threshold Bit Score: 98.5261
Created: 19-Mar-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteRING-H2 finger
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:Based on the structural evidence that Homo sapiens RNF24 (2EP4) binds two Zn2+ ions through its RING-H2 finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #            # #  #  #          #  # 
Q8WU17       545 DVCAICYHEFtTSARITPCNHYFHALCLRKWLYIQDTCPMCH 586 human
CAG32575     574 DVCAICYHEFtTSARITPCNHYFHALCLRKWLYIQDTCPMCH 615 chicken
NP_001086363 540 DVCAICYQEFhTSARITPCHHYFHALCLRKWLYIQDTCPMCH 581 African clawed frog
XP_006007365 542 DVCAICYQEFtTSARITPCHHYFHALCLRKWLYIQDTCPMCH 583 coelacanth
NP_001116520 535 DVCAICYQEFgSSARITPCSHYFHALCLRKWLYIQDTCPMCH 576 zebrafish
XP_007899105 540 DVCAICYQEFtTSARITPCNHYFHALCLRKWLYIQDTCPMCH 581 elephant shark
EEN63935     379 DVCAICYQEL-SSARITPCKHYFHAMCLRKWLYVQDHCPMCH 419 Florida lancelet

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