1PKO,1PKQ


Conserved Protein Domain Family
Ig_MOG_like

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cd05713: Ig_MOG_like (this model, PSSM-Id:319291 is obsolete and has been replaced by 409378)
Click on image for an interactive view with Cn3D
Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Statistics
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PSSM-Id: 319291
Aligned: 37 rows
Threshold Bit Score: 151.577
Created: 31-Aug-2007
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
Fab binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:Fab binding site [polypeptide binding site]
Evidence:
  • Structure:1PKQ_E; Rat MOG extracellular domain interacts with antigen binding fragment (Fab) of mouse monoclonal antibody,8-18C5; contacts based on 3.5 A distance.
    View structure with Cn3D
  • Comment:In rat MOG, a strained ligand-binding loop forms the upper edge of the binding site. It has been reported that the sequence of this loop, RDHSYQEE, appears unique for MOG.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        ##                  #          #                                
1PKO_A        21 GDEAELPCRISPgknATGXEVGWYrspfsrvVHLYRNGKDQdaeQAPEYRGRTELLKESIgeGKVALRIQNVRFSDEGGY 100 Norway rat
1PKQ_E        21 GDEAELPCRISPgknATGMEVGWYrspfsrvVHLYRNGKDQdaeQAPEYRGRTELLKESIgeGKVALRIQNVRFSDEGGY 100 Norway rat
O00478        45 GEDADLPCHLFPtmsAETMELRWVssslrqvVNVYADGKEVedrQSAPYRGRTSILRDGItaGKAALRIHNVTASDSGKY 124 human
Q7TST0        45 GTEATLPCQLSPeqsAARMHIRWYraqptpaVLVFHNGQEQgevQMPEYRGRTQMVRQAIdtGSVALQIQQVQASDDGLY 124 house mouse
EAW69883       3 GGHVELQCQLFPnisAEDMELRWYrcqpslaVHMHERGMDMdgeQKWQYRGRTTFMSDHVarGKAMVRSHRVTTFDNRTY 82  human
XP_001376617  64 GTDIILPCRLSPlmsAEHMEVRWFrsqfseaVFVFQKGKEEteeQLVEYTGRTELISEFIteGRLAVKIYNVQISDNGKY 143 gray short-tail...
CAN13255      45 GGDAVLSCRVFPamnAEDMELRWFrskfseaVFIYQNRQEQkeeQLAGYAGRASLVRDFLsqGEAAVRIGQVQVSDNGLY 124 pig
CAN13307      43 GGDTVLPCSVSPamnLETMELWWFrskpsepVYVYRDGVEQpgeQMVDFKGRAELLKDYIneGKVAVRIHNLRVSDNGMY 122 pig
EDM04563      47 GQDKELPCKLSPnisAEGMELRWYrdkpssaVHVYKNGKDVydeQMTEYKGRTTFNGNRVarGEAAVKIHNVTMFDNGTY 126 Norway rat
XP_001519553 139 GDDVELPCHLEPkmnAQNMEVRWLrsqlfpaVHVYRDGQDQageQMGEYRGRTELLKDAIndGSLTVKIRDVRVSDDGEY 218 platypus
Feature 1            # #### ##        
1PKO_A       101 TCFFR-DHSYqEEAAVELKVE 120 Norway rat
1PKQ_E       101 TCFFR-DHSYqEEAAVELKVE 120 Norway rat
O00478       125 LCYFQ-DGDFyEKALVELKVA 144 human
Q7TST0       125 HCQFT-DGFTsQEVSMELRVI 144 house mouse
EAW69883      83 CCRFK-DGVKfGEATVQVQVA 102 human
XP_001376617 144 QCYFRkGDVY-EQASLEVKVA 163 gray short-tailed opossum
CAN13255     125 TCFFRkGVFY-EEASLELKVA 144 pig
CAN13307     123 KCFFKkGSYY-EEASLELKVI 142 pig
EDM04563     127 HCVFKeHTSY-DQATLWLKVA 146 Norway rat
XP_001519553 219 RCLFR-DDEKrDEATLQLQVT 238 platypus

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