1RU4


Conserved Protein Domain Family
Beta_helix

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pfam13229: Beta_helix (this model, PSSM-Id:315812 is obsolete and has been replaced by 463811)
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Right handed beta helix region
This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Statistics
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PSSM-Id: 315812
Aligned: 103 rows
Threshold Bit Score: 32.0025
Created: 28-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RU4_A         108 YGFYVTGDYW-----YFKGVEVTRA-GYQGAYVIGSHN--TFEnTAFHHn------RNTGLEINNGg-----SYNTVINS 168  Dickeya chry...
45_pfamImport    1 SGVQIRTGSNp----VIRGNKIWGG-QNGGVLVYNGGLg-LLEqNEIFDn------AMAGVWIKTD------SNPTLKRN 62  
Q1RQ01         615 SGVQIRTGSNp----VIKMNKIWGG-QNGGILVYNSGLg-LIErNEIFDn------AMAGVWIKTD------SNPLMRGN 676  vase tunicate
26_pfamImport    1 ANILLDHFDGathetTITENTIYG--APYGVCVAHNSTvcSMSkNEVHT-------CMDGFAFTSG------GHGCYTAN 65  
22_pfamImport    1 SCVLVKKDSEv----SIFDSHIYDAeKANLVEATDGGIl-KVKnCTLNGectnsisSSIGASVLCEnlelrrNVSSTSGG 75  
28_pfamImport    1 PAISVADRSEf----TLTRCRVNGA--RYGLVVEDSDG--TVEgCEFSDl------SEDGIIIRIG------AAPTIRTS 60  
27_pfamImport    1 EAIRIKGDSRvn--aLIENCVIRSS-GGDCVAVGGKSAp-TFRnCSITG-------KLSGVRSYAQ------ATPTFIDC 63  
52_pfamImport    1 QAIHVEGGDAvd--aLIENCRIKAS-GDDGICVDGSARp-TFRnCDVTG-------KKSALRTMGN------ARAELVDC 63  
Q4E3J7         767 FGVVVNGPSAs---vTMSNVTIEDS-GVAGVFVQRGGVc-RFEqCVIKRs------KEDGIRMEQA------GAVVFEQC 829  Trypanosoma ...
16_pfamImport    1 NIIIMTQQAQa----VFTETTVQKS-AQNGVVLRNQTKa-LFEkCIFNEigrcaiiSADKTEFFCDds--tiMKIGGEGI 72  
1RU4_A         169 DAYRNYdpkkngsmadgFGPKQK-QGPGNRFVGCRAWEN-SDDGFDLFDs--PQKVVIENSWAFRNGinywndsafagng 244  Dickeya chry...
45_pfamImport   63 KIYDGRd----------GGICIF-NGGKGILEENDIFRN-TQAGVLIST---QSHPILRRNRIYDGQa------------ 115 
Q1RQ01         677 KIHDGRd----------GGICIF-NGGKGILEKNEIFRN-AQAGVLVST---NSHPQLRRNRIYDGFa------------ 729  vase tunicate
26_pfamImport   66 HIHDCTy----------SGVYVSdMAHPSLADSNCIENC-GFCGVLVDV---SGQGVFRRNTIRHCE------------- 118 
22_pfamImport   76 FIELRQc---------qLTTAVI-ENARFTAIGCDIFST-ESCGLATVG---QCDIVLDQTVIHNCRs------------ 129 
28_pfamImport   61 TITRCGn----------RGIYVY-QYGRPTIEACDISQT-GHAGV---AvvhQCAPVLRRCRIRDTRg------------ 113 
27_pfamImport   64 NITRSGl----------QGVLAM-KESRVIMHGCAVQNN-EEDGVVVME---QSNVVMSKCVVQDNKg------------ 116 
52_pfamImport   64 KLHCCEt----------SGVKTF-GESRATLRDCHIENC-QHEGVVAMQ---RSTVHMENCVVVDNKg------------ 116 
Q4E3J7         830 SILEQHqgvk----ttgTLGTAR-ADGEPKLINCTIDGSfCEKGVls---tkKSIVRLELCKISARSpe---------kg 892  Trypanosoma ...
16_pfamImport   73 SISSCG--------------------QNTIVAKTQILEC-ANVGILSYV---VSTPVVRECTIKDCGr------------ 116 
1RU4_A         245 NGFKLGGNQavGNHRITRSVAFGNVsKGFDQNNNAGg---VTVINNT 288  Dickeya chrysanthemi
45_pfamImport  116 AGVEITNNA---TATLEHNQIFKNKfGGLCLASGVQ----PITRGNN 155 
Q1RQ01         730 AGIEITNGA---TAVLERNQVFNNKfGGIFLATGVS----CILTENR 769  vase tunicate
26_pfamImport  119 TGVVVFCGPt-TPFHMSHEEVTNAR-----ILTSTP-----IFTENT 154 
22_pfamImport  130 NGAEFSELS---AVTATNCKFLANSgGGVSVSSTSAmfshCLFAGNA 173 
28_pfamImport  114 PAVSFARGCq-GTV--EECTTENTAlPAI-EVAADAt---PTIVESV 153 
27_pfamImport  117 PGVDVSNTA---KVVVNDCDIDANV-GGLWLWDHSC----AHVAASS 155 
52_pfamImport  117 PGVDASDDA---RVVLVDVVVDDNV-GGVWLWDHAS----CDVRGGV 155 
Q4E3J7         893 RGVVVQDGG---TVLLSQCDVFGCPrVGV-IASAMSq---LMVENST 932  Trypanosoma cruzi
16_pfamImport  117 SLIEVTDGA---ALRSIQNRFQGGCkQALFATHHTT----IASEGDT 156 
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