2V6Z


Conserved Protein Domain Family
Dpoe2NT

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pfam12213: Dpoe2NT (this model, PSSM-Id:314989 is obsolete and has been replaced by 463494)
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DNA polymerases epsilon N terminal
This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam04042. There is a single completely conserved residue F that may be functionally important. This domain is the N terminal domain of DNA polymerase epsilon subunit B. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. This domain has close structural relation to AAA+ protein C terminal domains.
Statistics
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PSSM-Id: 314989
Aligned: 9 rows
Threshold Bit Score: 98.6144
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2V6Z_M        28 ERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQE 97  human
Q17H49         5 AKLRAQIVSWFNISGFQIRSEASNFLAQQIAPLGKAARKRWLEDIASHVQGQNLDLPAVEKSHIELAIKE 74  yellow fever mosquito
Q29E58         6 IPLRKRITNNFKLCGFLIRSENSTYLAEQLLPFDADERDKWLTVITENLQGQKLATPHVERAALEKAINE 75  Drosophila pseudoobscura
A7YWS7         4 ERLRSRALSAFKLRGLMLRGEAVKYLTEALQSINEIELEDALEKIIDAVEKQPLSSNMIERSVVEAAVQE 73  cattle
Q5ZKQ6         4 ERLRRRLGSAFRVRGLLLRAEAVKYLTETLESLNEEEFEDVIDKIIDAVEKQPLSTNMIELSTVEAAVQE 73  chicken
Q19196         8 NALRREIVKTFQIHAFELKKEAVKLCVKLFLDHDKETRKKWTNKMIELLKKQTLQSSLISEELIRDTFRQ 77  Caenorhabditis elegans
CAG10412       3 RRIKSRVSAAFKMRGLVLRPEASKYLVEVLESVGPSELEDVIEKVLDAVEKQPLSSNMIELSVVESAVQD 72  spotted green pufferfish
XP_001632217   3 DPLRKKVLSTFRLNGLSLQSDATKYLRDVLVPLSEPEIEDWLEKIVETVQKQPLSSTLVDREVVETAVQE 72  starlet sea anemone
OCA26085      39 DKLKSKVTSAFKMHGLLLRAEASKYLSEVLSSVNEVELEDVIDSIIDAVEKQPLSSNMIEKSTVETAVQE 108 western clawed frog
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