Conserved Protein Domain Family
zf-LITAF-like

?
pfam10601: zf-LITAF-like (this model, PSSM-Id:313756 is obsolete and has been replaced by 463165)
LITAF-like zinc ribbon domain
Members of this family display a conserved zinc ribbon structure with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumor necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure.
Statistics
?
PSSM-Id: 313756
Aligned: 364 rows
Threshold Bit Score: 32.1627
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
A0EBA2          26 ESSQFFCNKCSKVQESMIDHKVGTWTLICC-GIWCILTFigGLIp-----FCCKPCKDVVQYCPECNQKVGE 91  Paramecium tetraurelia
232_pfamImport   1 WPRAVICPACRELSLTRVERKICGGTH----AMAALMFA--CTIvggplaYIGNQWKNTEHYCCRCNRRLVT 66 
92_pfamImport    1 -PRAVLCPACRELSITRVERKICSGTH----VMAAFMLM--CTIvggpvvYMSKAFKNVEHYCCRCNRRLAT 65 
213_pfamImport   2 FPALVECPGCKGVAPTTTEHTIGKGTHWMAvMFFCTTGVg-VFIp-----YSMKPFKNVRHNCMRCGRVLAT 67 
143_pfamImport   2 VPAPVDCPVCRNRTLTRIEYVSGGFTALIAfAVLGLCC---CCIp-----FFIDGTKNVRHYCGSCNALLAT 65 
193_pfamImport   2 APVR--CPHCAATAVTRVEYSAGRTTRVCAvATSLLLSPaaGFVp-----YLIDGTKDKKHFCGSCGTLLAV 66 
XP_002912040   114 dPAPAQCPSCGKRMVTNIRHTVGTTTHLWA-GVALAVACvp-cIp-----YCLDSTKDVKHSCTQCGTLLAT 178 Coprinopsis cinerea o...
XP_002836915    87 SPAPVQCPVCNARGLTVVTYEIGNTTHLAA-LLLCFVTSlg-cIp-----YMFNAFKDVAHSCASCRTMLAV 151 Tuber melanosporum Mel28
ENH84990       114 HPAPVECPECHARGVTAVEYSSGGFTHALA-ALVCFVSClg-cIp-----YFFSSLKDARHKCAKCGIPLAT 178 Colletotrichum orbicu...
XP_003054719    91 QSAPVVCPSCGVRDFTVTTAEAGGFTHAAA-ALVCFVSClg-cIp-----YCISSLKDVHHRCANCGVPLAd 155 Nectria haematococca ...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap