Conserved Protein Domain Family
CDC27

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pfam09507: CDC27 (this model, PSSM-Id:312868 is obsolete and has been replaced by 462819)
DNA polymerase subunit Cdc27
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif.
Statistics
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PSSM-Id: 312868
Aligned: 10 rows
Threshold Bit Score: 246.657
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6CE56        16 LSVSYAMLSRKFDIAPKQAREVLTEYVESNK-SD---NSLHVTYCLRGVKRHGVST------------------------ 67  Yarrowia lipoly...
P84798        19 KIVTYKWLSYTLGVHVNQAKQMLYDYVERKR-KEnsgAQLHVTYLVSGSLIQNGHSch---------------------- 75  cattle
Q7SAP2        17 KVVTYRLLSRALRVHPNVAKQMLYDFHKTQS-SKk-pGTVYATYMLYGIKKSVQnqngnamdidlpssl----------- 83  Neurospora crassa
Q2UB13        19 RTVTFRSLSRALRVHSTLAKQMLYDFHHNEN-NKk-pQSVNATYIITGVQKAPA-Patnghtngednrddvfpssp---- 91  Aspergillus oryzae
XP_005918105  18 KIVTYKWLSLTLGVHVNTAKQMLYHYLDHKR-KEs-sAQLHATYLVSGKFVDNGQTsh---------------------- 73  Burton's mouthb...
XP_001624310  21 RIVTYKWLSRTLTVTANQAKQMLYAFLTAQQeKKn-kPQLSVTYLVGGRILQHGEMcs---------------------- 77  starlet sea ane...
XP_015708116  19 RIVTYKWLSYTLGVHVNQAKQMLYDYVERKR-KEnsgAQLHVTYLVAGNLVQNGHTch---------------------- 75  Japanese quail
XP_011390219  20 KLITYRLLSRELRIHVDEAKQALAAFFDSHK-DK---SQLDATYILIGRSAFRETQpdadkiardkdeqsegdklvgpss 95  Ustilago maydis...
XP_756008     19 RTVTYRSLGRALKVHCNLAKRMLYEFHRTEN-KKk-pQSVNATYIITGIQRPSE-Katnsihaeshddgddimqgsp--- 92  Aspergillus fum...
XP_001538907  18 EIVTHRALSRALKVHSNLAKRMLYEFHRLEN-SKk-pQSVNATYLISGTPALAQRHalngcakdgddeimqsspft---- 91  Ajellomyces cap...
Q6CE56        68 ------------------------------IELCDGSEIATKRSEFNEPVSQLIYSVSASPTT-TTILYNMALEASSMgP 116 Yarrowia lipoly...
P84798        76 -----------------------------kVAVVREDKLEAVKSKLAVTASVHVYSIQKAMLKdSGPLFNTDYDILKS-N 125 cattle
Q7SAP2        84 ---------------pdadpvddeevpsytLVLVQEERLADVLKEYETITSIHVYSVGPHPAKdLTLLVDAAQSALAI-- 146 Neurospora crassa
Q2UB13        92 ----------ylsssmpnqdsapdtvatasVLLVREEDLEGRAPLVSHA----GLDLQQTVLQdLNVLTDVSRETVSN-- 155 Aspergillus oryzae
XP_005918105  74 -----------------------------kVSVVREDQLEDFKAKMSLVVSVHVYSVQRALLRdSGPLYAVDYDAVKD-N 123 Burton's mouthb...
XP_001624310  78 -----------------------------qYVLTTDDRLEETKSQFDPVTSVHIYSIQKQTLKdSNSLYMVDYDISRE-H 127 starlet sea ane...
XP_015708116  76 -----------------------------kVAVVREDKLEATSSXXXXXXXVHVYSIQKALLKdSGPLYNTDYDIIKT-N 125 Japanese quail
XP_011390219  96 msssstaparsfldsrvtqrqtkanverqvIRLVSAADLEKARSSFEQISSCHIYSVSPGRLLdAAQLTAVQHDLHTQ-Q 174 Ustilago maydis...
XP_756008     93 ----------flpssmpnqdaasdevpttsIILAREEDLDGKCLRLARS------NLQPAVLQdLNVLTDVHREMLAA-- 154 Aspergillus fum...
XP_001538907  92 ----------ssqaarqedgdgnddipttsITLVREEDLLEAKSRYQTVFSIFIYSVEPTRLQdLNVLGDIGHDIMQH-- 159 Ajellomyces cap...
Q6CE56       117 NKFAIVSELVEGVDLTP-TKPVIKDDS------PPVAAAASKPLITTAPAkkpaakqkpkldffggkkKEAKETTPAKhE 189 Yarrowia lipoly...
P84798       126 LQNCSKFSAIQCAAAVPrAPAESSSSEkleqsdPPVSPEMQASDELTTNGhgpp----------vpkqSSQQPKGIMG-M 194 cattle
Q7SAP2       147 ------KDDAKKPQPRPiVNSHVRRRErkglglKAAAPAKQESKTKTAPTkt---------------aPAKPSPAPAPaA 205 Neurospora crassa
Q2UB13       156 --HSQEDPLEYGGQWSMiQNKNVKRRTg----sRPPPAPAATKSKPTIPSkr---------------pS-EATSSQIKpE 213 Aspergillus oryzae
XP_005918105 124 LKNCSRYSAIHCASAVPmSSVELQQARe----vQQAPTPEPENKKTGMNGdtsp----------vlksSAKPPKGIMG-M 188 Burton's mouthb...
XP_001624310 128 KHEDNRWSHIYCKEAARlGDGGESRAAag---rSALGKENSHPGLKTANGhskclsnil-icvlicieAGSSTTDVQKnK 203 starlet sea ane...
XP_015708116 126 LHNCSKFSAIHCADAVPrTPAEVAQARtlarssSQTASDTSTVSTPPVNGhgpt----------aakqSSQPPKGIMG-M 194 Japanese quail
XP_011390219 175 KYVDSWQQTHRGAQLGViVNPNIKDNYdpskgiPSLGAPSGPALPVSKDSk------------------TANSSSSSSsS 236 Ustilago maydis...
XP_756008    155 --HAHEDPLEYGKQWGMiQNKDVKRRTg----vRPPPPAPTPAQEAAAPSkr---------------pSQDEATQKVKsE 213 Aspergillus fum...
XP_001538907 160 ---QPNDPLEYGKQYGMiLNRNVKRRSg-----lPPAPPAPDPVETVKKQkveka--------neapiTTKPEEPTQPqA 223 Ajellomyces cap...
Q6CE56       190 KKDDHKEAVKDVKKETTPIKEEkAA-----PVKEERKETKAPKGKSVLDAVKEGKKNEPKPKEPAPKSKKQLEA------ 258 Yarrowia lipoly...
P84798       195 FASKAASKAQDANKETKTEAKE-VM-----NSEKNNENLLLSGYWESMIVLFQAQCINKLKVNLDSEQEVKEEK------ 262 cattle
Q7SAP2       206 APAKPQEESKSTAPAMEPEAPTaTT-----KKPAPSLKRNTSAASGIMQAFSKAASLPKKAKTSEKSTTAAEE------- 273 Neurospora crassa
Q2UB13       214 PKKEETAASEQASTRESTPSTAsKP-----TEKAAPLKR---EKSNLFSSFAKAKPKQKKE-----ESATPAES------ 274 Aspergillus oryzae
XP_005918105 189 FANKSAPKSQDNTKEMKPEKKE--------DIDAPKSK--PVAKANPVANFFGTQTSKKPEKPVKKEEAPQSSSr----- 253 Burton's mouthb...
XP_001624310 204 APPQKSKKGQLPTMGMFAVKTEkKPepkaePVKPPETKKQDKSNSGGMLSFFGKPTAGQSKKTEAKQEKIEKKS------ 277 starlet sea ane...
XP_015708116 195 FAAKAASKTQDANKE---PKAKeAP-----SVSAASSK--PSAKANIMNNFFGKAAMNKLKVNSVPEQ-PKEEK------ 257 Japanese quail
XP_011390219 237 STVTSALGTRPLSTTTTIAKATtAA-----SSAPVGGRKSGLDWSRAKPKGSDSKPAAAKIKAQSSIQSVPDHKtllgsd 311 Ustilago maydis...
XP_756008    214 SKKAEHAAMTSQTKAEEKPPVK--P-----SEKTAPLKR---EKSDLFSSFAKAKSKQKKDGS-ATPAVSGAES------ 276 Aspergillus fum...
XP_001538907 224 KTQTPQASSAASSRPSSGGNNKgGT-----SDKPSSLKR---DSSNIFKAFAKVKPKVKKDDVLERPSGREVES------ 289 Ajellomyces cap...
Q6CE56       259 ----EEAEKKRQRElEEALF-----------------ADEDEDFDIPV-----------KQPV----------------- 289 Yarrowia lipoly...
P84798       263 ----KVEQPPLSVT-EPKLAapv-----------dlkKSSKKAEPVRMqqkek-krrkqMELS----------------- 308 cattle
Q7SAP2       274 ----------TPAAlSDDGE-----------------DDDDVPLPKPD-------------------------------- 294 Neurospora crassa
Q2UB13       275 ----AEPSGAEDVFgDDDDA-----------------DEEPEELFPDS-----------GKSA----------------- 305 Aspergillus oryzae
XP_005918105 254 ----AAQQQHERSKpEEKQEt---------------vAPVEPQKDTKKdsrs---ktkrLEDS----------------- 294 Burton's mouthb...
XP_001624310 278 ----QEQKPKKEKIhEKESAtsnekkeqekerkksegKPKPRSEKEKQptrk---rvkkFESSdeeedeqpiksksekks 350 starlet sea ane...
XP_015708116 258 ----EAVKASVPATePESSPntv------------aeKPGRKTEPAKIqqkdkkskmkrMDKS----------------- 304 Japanese quail
XP_011390219 312 dedeDDDDDEDDDKpAKLGYa---------------dEDDHNQDVTKAelvrgtapqgtGKRA----------------- 359 Ustilago maydis...
XP_756008    277 ----AEPSGAEDVVlGDASD-----------------EEEPEELFPDS-------------GK----------------- 305 Aspergillus fum...
XP_001538907 290 ----AEHSGPEDVVlDDAS------------------EEEREDLFLDT-------------GT----------------- 317 Ajellomyces cap...
Q6CE56       290 ------KkEEPEK-ETIKEElQEDLEKAEKDT--LTDAqm-iAGGELDvTTEDVEMGDDD--NG-------NKEDVEMTD 350 Yarrowia lipoly...
P84798       309 ------D-DETKEtENMKKK-RRRIKLPESDS--SEDE----VIPDSP-GAYEAESPSPP--PPspspepvLKTEPEPPP 371 cattle
Q7SAP2       295 --------AQSTR-KSKKER-EEELRRMMEDD--EDEDm--eETADSP-APEEEEEEEPA--VEeppakadVAKEEKKEI 357 Neurospora crassa
Q2UB13       306 ------SsAAATR-ESRKER-EEKLKQMMEDDdeDEDEem-pDATEPP-EESKPIDQPPP------------KKPELKEE 363 Aspergillus oryzae
XP_005918105 295 ------DgEEEKM-ET--KK-RRRIKKPEPDS--SDED----VIPDSPqPVVTREPSSPS--P---------KKEVEPDR 347 Burton's mouthb...
XP_001624310 351 rkksndNkHEPAG-EKTKQK-RKRAKNVLSDE--STDD-------ESPqASEQSVISETP--V---------AEQQTKPR 408 starlet sea ane...
XP_015708116 305 ------DnEEEREpENQKRR-RKRIKQLESDS--SDEE----DVPASPiLEEEKAPSPPPlvPA-------LKAELEPAT 364 Japanese quail
XP_011390219 360 ------DaRSQTE-AKEAAQ-RKELEAMMDTD--DEDNdv-qIVEPSGvSTSGNNTGQGK--DLd------PDVDMADST 420 Ustilago maydis...
XP_756008    306 ------SsTANNR-ETRKER-EEKLRKMMEDE--DDDDeemaDVPEPPmEEEKTIDQPP-------------TKEEPREE 362 Aspergillus fum...
XP_001538907 318 ------RrSNSKR-ESRKER-EEKLRKMMEDE--DMEDvp-eDVPELPpARAPERTDTSQ------------SEEVPKAE 374 Ajellomyces cap...
Q6CE56       351 VHM--TNDgedvhttttTAKRGKKKV-----------IKKVQELD-EDGYVTYKKVETWESCDEDEDEsGlkeevkrdvk 416 Yarrowia lipoly...
P84798       372 VKG--SDG---------ENKRKRKRV-----------LKSKTFTD-EEGCMVTEKVYESESCTDSEEE-L---------- 417 cattle
Q7SAP2       358 VTT--SGD---------GRRRGKRRV-----------MKKKQIMD-DQGYLVTIQEPAWESFSEDEAP-P---------- 403 Neurospora crassa
Q2UB13       364 ITV--QG----------GRRRGRRQV-----------MKKQVRKD-DEGYLVTVEEPSWESFSEDEPA-P---------- 408 Aspergillus oryzae
XP_005918105 348 HSHpsSSE---------MKIRKRRRV-----------MKSHTFVD-GDGCMVTEKGYVSESYSESEDDfK---------- 396 Burton's mouthb...
XP_001624310 409 VSE--S-----------AKRRKRQKV-----------LHSKTYMN-DEGFMVTEKVYESESTDASDEE------------ 451 starlet sea ane...
XP_015708116 365 TEA--SAG---------GKKRKRKRV-----------LKSKMFVDeEEGCMVTEKVYESESCTDSEDD-F---------- 411 Japanese quail
XP_011390219 421 VTD--TMD---------GSEAAPTAAkrrvrkkrkigTKKLRSKD-ERGYTVTKTIDEYESYSSDESD-T---------- 477 Ustilago maydis...
XP_756008    363 ITV--SG----------GRRRGRRKV-----------MKKKTVKD-EEGYLVTVEEPTWESFSEDEPA-P---------- 407 Aspergillus fum...
XP_001538907 375 SKE--EARap------kGRRRGRRQV-----------MKKTTIKD-AEGYLVTKEEPVWESFSEDEAP-P---------- 423 Ajellomyces cap...
Q6CE56       417 kEV----------KKEVKKESP-------------------EPaAGAKK----------SK--------------KANKQ 443 Yarrowia lipoly...
P84798       418 -KM----------KTSSVHRPP-------------------AM-AVKKE----------PKeerkgpkkgtaamgKANRQ 456 cattle
Q7SAP2       404 -AD----------KPKPKVANP-------------------APpAAAGK----------AKk------------pAPKGQ 431 Neurospora crassa
Q2UB13       409 -PP----------KKKPAVS--------------------------ALK----------GKp-------------AGKGQ 428 Aspergillus oryzae
XP_005918105 397 -PS----------KQASRDPIK-------------------AKpSSSKEdekktqkkasANs------------nKGAKQ 434 Burton's mouthb...
XP_001624310 452 -PV----------EVKPAEPKK-------------------TSpQANKK----------ALd------------pKSAKQ 479 starlet sea ane...
XP_015708116 412 -AK----------TKPPAVPKQ-------------------PAlPVKKE----------PKeerknqkkgaasagRANKQ 451 Japanese quail
XP_011390219 478 -PVvagskrtsgaTKKEAPNKPaearstsasasaipapsapTKpTSASN----------NSgprkpsg-gttpapAKKGQ 545 Ustilago maydis...
XP_756008    408 -PP----------KKKPALS--------------------------APK----------GKa------------gGKAGQ 428 Aspergillus fum...
XP_001538907 424 -PV----------KRKLAVSVN-------------------SKsTSSNK----------GS--------------QKMGQ 449 Ajellomyces cap...
Q6CE56       444 SSLMSFF-KK 452 Yarrowia lipolytica
P84798       457 VAITGFFqRK 466 cattle
Q7SAP2       432 GNIMSFFsKK 441 Neurospora crassa
Q2UB13       429 GNIMSFFgKK 438 Aspergillus oryzae
XP_005918105 435 ASIMGFFqKK 444 Burton's mouthbrooder
XP_001624310 480 SSLMSFFgKK 489 starlet sea anemone
XP_015708116 452 VSIMGFFqKK 461 Japanese quail
XP_011390219 546 QSLNSFFtRK 555 Ustilago maydis 521
XP_756008    429 GNIMSFFsKK 438 Aspergillus fumigatus Af293
XP_001538907 450 GNIMSFFgKR 459 Ajellomyces capsulatus NAm1
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