Conserved Protein Domain Family
FAM53

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pfam15242: FAM53 (this model, PSSM-Id:291895 is obsolete and has been replaced by 464582)
Family of FAM53
The FAM53 protein family refers to a family of proteins, which bind to a transcriptional regulator that modulates cell proliferation. It is known to be highly important in neural tube development. It is found in eukaryotes and is typically between 303 and 413 amino acids in length.
Statistics
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PSSM-Id: 291895
Aligned: 22 rows
Threshold Bit Score: 197.244
Created: 17-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q66IH4         1 MVTLITEKLQNQSLDDLSCKTYNLNLHPSVKLNKSACLFPYE-I-NEDSPWKVLNGTYPI-RNEVnknsifsfstcpysA 77  western clawed ...
XP_005794716   5 MVIIYKKTVEKKGGDDVTTKRTDLGTFQAQTMSQGAALFSCG-L-METSRWREVGTSCAL-QQRP--------------V 67  southern platyfish
XP_003441827   5 MVIIYPKTLEKKGADDVTTKRTNFVPFQAQTMSQGTALFSCG-L-MDTSRWRDMGHRCAI-QRRP--------------V 67  Nile tilapia
XP_003961199   5 MVIIYKKTLEK-GAGDVKSNSTGLGPFQAQIMSQGAALFSLG-L-AEASQWSDKSHGCAI-QQRP--------------V 66  torafugu
XP_002936879   1 MISMITEQLQKQSLEDLKCKSFSISLPLPDHPDPEGCSSPYHfV-SEDRSWGLISHCPRI-ELED--------------G 64  western clawed ...
XP_001368184   1 MITLITEQLQKQSLEELKCTCFRISLPLPDHSDVSTCGDSFQ-LvSEGASWRGLPPCPCA-GLKD--------------S 64  gray short-tail...
XP_003455250   1 MVTLITEQLRKQSLEEPYHKAFSFSV--------NVSLPTVG-S-SPTVSWSAHKTTQESyTSTT--------------H 56  Nile tilapia
XP_005795537   1 MVTLITEQLCKQSLEEPYHKAFTFNA--------SVSLPAVG-S-SPTISWNSGKTTQEA-SSDT--------------H 55  southern platyfish
XP_002744246   1 MITLITEQLQKQTLDELKCTRFSISLPLPDHADISNCGNPFQ-LvSEGASWRGLPHCSCA-EFQD--------------- 63  white-tufted-ea...
XP_004073374   2 MVTLITEQLRKQSLEEPYHKAFSFNST--------VSLPAVG-S-SPTISWSESST---I-QAHP--------------S 53  Japanese medaka
Q66IH4        78 ---GTS-----------GSYSLQWQNESSS-A-SKVSG-WI-SELTLN----DSFGQPLAPPTKRHCRSLSEPDELSRCR 135 western clawed ...
XP_005794716  68 ---GTSleslwdvlpdvHRTSAHWGWDVGS-T-SSTIS-SLlQDLSLT----DA-SHSTAPPSKRQCRSLSCSDELSSCR 136 southern platyfish
XP_003441827  68 ---GTSleslwdvlpevHTSSAHWDWDVGStS-STITN-LL-QDLSLT----EA-SHSTAPPSKRQCRSLSCSDELSGCR 136 Nile tilapia
XP_003961199  67 ---GTSleslwdvlpeaHEGSSHWDWDVSS-T-SSTITsLL-QDLSLK----EGL-QSTAPPSKRQCRSLSCSDELGS-R 134 torafugu
XP_002936879  65 ---IRLgchh---hsssSLHFPVLSRESSP-H-RRSPS-HI-PE---A----GNSVAPPAPPTKRHCRSLSVPEDLSRWR 127 western clawed ...
XP_001368184  65 lslSYHqssl---slhfKPPSRGNSPQEKP-H-CQGLS-PE-SP--GS----EKVPVPPAPPSKRHCRSLSVPVDLSRWQ 131 gray short-tail...
XP_003455250  57 ---PSSiasv---lddsCGLDSLWPTSHSG-E-SLR-G-PE-RPFKVF----QSSPP---PPPKRHCRSLSVPEDLSQCR 118 Nile tilapia
XP_005795537  56 ---QSCkayv---ladsC---DPWPRSCSGeP-LQGLE-VS-LTNKSF----QSSPPPP---PKRHCRSLSVPEDLSQCR 116 southern platyfish
XP_002744246  64 -----Slnfs---yhpsGLSLHLRPPSRGS-S-PKEQP-LS-QVLSPEppdpEKLPVPPAPPSKRHCRSLSVPVDLSRWQ 131 white-tufted-ea...
XP_004073374  54 ---Sd-----------fCIFDSTRSPSHSQ-PpQQRAG-AG-ETVQSS----------PPPPPKRHCRSLSVPEDLSRCR 106 Japanese medaka
Q66IH4       136 SPWKPGNSKVWTPVSKRRCNSGG---------STTL----Q-----------RC-N--Sh-------------GGGNLQ- 174 western clawed ...
XP_005794716 137 STWRPQGSRVWTSVEKRRCHSGG---------SVQR----S-----------GL-G--Nsq-----------lCFPAMQ- 177 southern platyfish
XP_003441827 137 SSWRPQGSRVWTAVEKRRCHSGG-----------SV----Q-----------RS-SigNmq-----------sGFAGMQ- 177 Nile tilapia
XP_003961199 135 STWRPQGSRLWTTVEKRRCHSGG-----------SV----Q-----------RGiG--Naq-----------lGFPAMQ- 174 torafugu
XP_002936879 128 PIWRPSGSKVWTPV-KRRCNSGGvgavlavqtQSPS----Q-----------GV-S--Slrf--------qndPSASIRc 180 western clawed ...
XP_001368184 132 PVWRPVPSKLWTPI-KRQGSNGGvggplvphqSSSP----K-----------RV-S--Slrf--------lqaPSASLQc 184 gray short-tail...
XP_003455250 119 TTWHPSASRVWTPV-KRSCHSGG---------ASSS----G-----------SG-A--SslplcgpsssfpssSIHSSA- 169 Nile tilapia
XP_005795537 117 STWHPSASKVWTPV-KRGCHSRG---------ASSS----GsgasslllcgpSS-S--Fts-----------sSLHSSS- 167 southern platyfish
XP_002744246 132 PVWRPAPSKLWTPIKHRGSGGGGgpq---vphQNPP----K-----------RV-S--Slrf--------lqaPSASSQc 182 white-tufted-ea...
XP_004073374 107 STWHPSASKVWTPV-KHGCHSGG---------AASSvplcG-----------PS-S--Sft-----------sSIHSSS- 150 Japanese medaka
Q66IH4       175 -------RSTSI-SLPQNPLTVKhifaaSN-CDTSPV-QRPSSASSGFVDSNEg-SAASNVRWN-SAGP--S--EFNPRR 238 western clawed ...
XP_005794716 178 -------RSSSF-SLPARSDGQEq----LC-FPQLSSrP---SAFSGPTPNSSdpSAQS--------------------- 220 southern platyfish
XP_003441827 178 -------RSSSF-SLPARSNTLE-----LP-----SFtQRPPW--------SSgfTSLTPSSSS-SVPL--S--SDPSSQ 226 Nile tilapia
XP_003961199 175 -------RSSSF-SLPARCNTLEl----SC-FSQCAPcP---SAFTSLTLSSSepSAPPL-------------------- 218 torafugu
XP_002936879 181 iq---anSPPFF-SLALCRESP-----------------------------GPytLSPTSVFWEnSEGP--S--CFPLQR 223 western clawed ...
XP_001368184 185 vkanrscSPPFF-SLALTHHDS----------------------------PRPcaASPPSGSWE-SDHE--PlsPFPPQR 232 gray short-tail...
XP_003455250 170 -------SPTFF-SLALSSDSPVs----WG-FPWDPCdTLKGACSASFATPSScsSSPAPLTSH-YV----------LQR 225 Nile tilapia
XP_005795537 168 -------SPNFF-SLALSSDSSL-----SCgFPWDPCdTLKGACSASLATPSScsSSPAPLVSH-SI----------LHR 223 southern platyfish
XP_002744246 183 apahrpySPPFF-SLALAQDS-----------------------------SRPcaASPQSGSWE-SDAEslS--PCPPQR 229 white-tufted-ea...
XP_004073374 151 -------SPTFFsLALSSDSLLS-----WS-FPWEPPdAPNTAASLALPSSCs--SSPAPLVSH-SV----------LQR 204 Japanese medaka
Q66IH4       239 RFSLSQEHITENADLSPSANSTP-----------------------TSTPELRRR---Q--G---LLRCRSQPCVLNERK 287 western clawed ...
XP_005794716 221 -LYLSHEQICLPEAEEPSPASSP-----------------------DSTPELERRggeG--G---LARSRSQPCVLNDKK 271 southern platyfish
XP_003441827 227 PLYLSHEQICLPEPRGPSPPSSP-----------------------DSTPELERRggqG--G---LPRSRSQPCVLNEKK 278 Nile tilapia
XP_003961199 219 -LHLSHEQICLPEQPEPSPPSSP-----------------------DSTPELERRg--GqgG---LARSRSQPCVHNDKK 269 torafugu
XP_002936879 224 RFSLSPVLIKEAGRFLPSTSSSP-----------------------PSTPELVRRq--Q--C---LPRSQSQPCDLDTRK 273 western clawed ...
XP_001368184 233 RFSLSPILIPQAGRFLPSARSSP-----------------------SSSPELTWRp--H--G---LPRSRSQPCDLDARK 282 gray short-tail...
XP_003455250 226 RFSLSPVHIQKSPMVPLPPQPCPssalkcgrsdlehpalspsptsaCSTPSSSRRdlhP--A---LPRCHSQPCDM--RK 298 Nile tilapia
XP_005795537 224 RFSLSPVHIQIASVASLHPPPSPahvlahsfsgpehpslcpsptsaCSTPSCSRRdlhP--A---LPRCHSQPCDM--RK 296 southern platyfish
XP_002744246 230 RFSLSPSLGPQASRFLPSARSSP-----------------------ASSPELPWRp--R--GlrnLPRSRSQPCDLDARK 282 white-tufted-ea...
XP_004073374 205 CFSLSPVHIQNASVASSHPQPSPsgfsgveqp-----glspsptsaCSTPSSSRRglpP--A---LPRCHSQPCDMRRPR 274 Japanese medaka
Q66IH4       288 TRLKRRRDEDV-RWTRPSLDFFKMTR 312 western clawed frog
XP_005794716 272 IGVKRRRPADS-QKQRPSLDLAKMTQ 296 southern platyfish
XP_003441827 279 TGMKRRRPDDT-HKQRPSLDLAKMTQ 303 Nile tilapia
XP_003961199 270 VGMKRRRPADS-QKQRPSLDLAKMTQ 294 torafugu
XP_002936879 274 CGIKRRHEEDT-RWHRPSLDFYKMNQ 298 western clawed frog
XP_001368184 283 GGVKRRHDDDP-RRLRPSLDFDKMNQ 307 gray short-tailed opossum
XP_003455250 299 PRLKRRHDPDVlPYPRPVLDFSKMTQ 324 Nile tilapia
XP_005795537 297 PRLKRRHDPDVlPCSRPGLDFSKMTQ 322 southern platyfish
XP_002744246 283 TGVKRRHEEDP-RRLRPSLDFDKMNQ 307 white-tufted-ear marmoset
XP_004073374 275 LKRR--RDPDVlPCPRPGLDFSKMTQ 298 Japanese medaka
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