Conserved Protein Domain Family
CCDC66

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pfam15236: CCDC66 (this model, PSSM-Id:291889 is obsolete and has been replaced by 434558)
Coiled-coil domain-containing protein 66
This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Statistics
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PSSM-Id: 291889
Aligned: 16 rows
Threshold Bit Score: 108.299
Created: 29-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q29DB3        412 HDLKDGSEDDVQSMQSSS-----------TYLRGQNAPLDAQTLAERMDKRRKASEYHNAIKKQLHEREMIRKWELERHR 480  Drosophila ps...
XP_008103460  452 TTSCHSTPTEIEVSGKTSrsnisessqkaSFLRSMTALLDPAQIEERERRRQKQLEHQKAIMAQVEEKRKQKQLEVEQRK 531  green anole
XP_002068075  372 srGGKDSEDDIQSLQSSS-----------TYLRGQNAPLDAHTLQERIDKRRRAAEYHNAIKKQLHERELIRKWELERHR 440  Drosophila wi...
NP_001161484  412 TTGSQVEPSEEEHIAKPVrdmamansqktNFLRSMTALLDPAQIEERDRRRQKQLEHQKAITAQVEEKRRKKQLEEQQRK 491  dog
GAA53864      642 HFSASIPIPDLMCTDFGAvtttr-pvsqfNRTRGFTQTLYSSPADEAARLRR-AEEIQRANLEQIEEHRRIRELERANRL 719  Clonorchis si...
XP_007500701  645 plSGGQLGSAEENLGKSTqdvattnvektSFLRSMTALLDPAQIEERDRRRQKQIEHQKAITAQVEEKRRKKQLEEQQRK 724  gray short-ta...
XP_002048096  437 HDLKD-SEDDVQSVQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWELERHR 504  Drosophila vi...
EGI68942      236 sqvlvinhDSASSPDSSTtgstgsdinkvSYLRGQNIPMDAEILQEREMKRQKALELQNAIKQQLEEKDRQRKEEKERRL 315  Panamanian le...
EFX72153      269 PPRWVARPTNATFVQTEPlms-----ggpSFLRGQNVVVDVAELAERERKRAKANELQRVLLQQLAEKENQKLLEKKRQQ 343  common water ...
XP_002085686  445 HDLKD-SEDDVQSMQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWEQERHR 512  Drosophila si...
Q29DB3        481 QEEQIEEERLRRQKQMDQERAEYERRQQLEREEAQQKKQQAMLDAIAKAEVAAQMEKQQKRKKPQPqpqpqpqtvpkdgp 560  Drosophila ps...
XP_008103460  532 QEDQEEEQRLAKEQELMKKQFEEDLLKQKQKEEIMALKTNVLYQTMQKAQELAQRLKQEQRIKELA-------------- 597  green anole
XP_002068075  441 QEEQMEEDRLRRQKQMEIERLEYERRQALEREEAQKKKQQVMLDAIAKAEVAAQKEKQKKRKNREE-------------- 506  Drosophila wi...
NP_001161484  492 KEEQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELA-------------- 557  dog
GAA53864      720 LEDKLEEERLERERAQLRAIAEAENKEKQLREMEENTRTQILLDNLKQAREEAANYRTQVRFRRGG-------------- 785  Clonorchis si...
XP_007500701  725 QEEDEEERRLAREREEMQRRFEEDLLEQKRKEEMMALKTSELYQSMQRAQELAQRLRQEQRIRELE-------------- 790  gray short-ta...
XP_002048096  505 QEEQLEEERMRRQKQLEQERLEFERRQLQEREEAQKKKQQAMLDAIAQAEMAAKMEKQKKRKNRMP-------------- 570  Drosophila vi...
EGI68942      316 REEMLEEERIRRERERDKARFEEEQRIIREKEEAKLRKTQAMREVLEAAERLAKEDGKNRRKREEH-------------- 381  Panamanian le...
EFX72153      344 EEEERQELELQRHLEAERRQIEEERRRVQEKKEAEERRLEAVKEAIAGAQQNALAEKLARRRNlqnrtavvqpasgadnd 423  common water ...
XP_002085686  513 QEEQIEEERIRRQKQLEQERLEFERRTLLEREEAQQKKQQVMLDAIQKAEVAAKIEKQKRRMVHQPskvsqeteedd--- 589  Drosophila si...
Q29DB3        561 qegellrvqsveEEEEEA 578  Drosophila pseudoobscura
XP_008103460  598 ------------EKGHDT 603  green anole
XP_002068075  507 ------------VKvktt 512  Drosophila willistoni
NP_001161484  558 ------------QKGHDT 563  dog
GAA53864      786 ------------VDQQNP 791  Clonorchis sinensis
XP_007500701  791 ------------QKGHDI 796  gray short-tailed opossum
XP_002048096  571 ------------SKEHRQ 576  Drosophila virilis
EGI68942      382 ------------TDEDtd 387  Panamanian leafcutter ant
EFX72153      424 ptaasvsvrsedrstpah 441  common water flea
XP_002085686  590 --eaelmrvqsvEEEEDA 605  Drosophila simulans
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