Conserved Protein Domain Family
APOC4

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pfam15119: APOC4 (this model, PSSM-Id:291778 is obsolete and has been replaced by 434474)
Apolipoprotein C4
Statistics
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PSSM-Id: 291778
Aligned: 14 rows
Threshold Bit Score: 164.225
Created: 29-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q61268        28 MSTESLSPTPGPESSR-WSLVRARVLEMVEPLVTRTRDRWQWFWGPGAVQGFMQTYYEDHLKDLGPRTQAWLQSSRDHLL 106 house mouse
Q3SYR5        31 EPEGTLSPQPAPARSS-WSLVPGKVKEWVEPLVNRTREKWKWFWGPTAFRGFMETYYDDHLKDLGSRARAWLRSSKDNLL 109 cattle
XP_008505048  49 EPTGSPSPPPAWGSSP-WGLVQSKVKELMEPLVTKVRERWQWLWGPSLFQGFMQTYYDDHLKDLGPRAKAWLHSSKDSLL 127 Equus przewalskii
NP_001167603  31 VLEESPTPSPEPKASHaWSLVPGKMKEWVQPLVTRTRERWEWFWGPGAFQGFVQTYYDDHLRDLGSRTKAWIHSSKDSLL 110 pig
XP_003799640  31 MPPGTQSPPPEPK-SH-WSQVQSKVKELVEPLVTKTRERWQWLWGPGPFQGFLQTYYHDHLKDLGPRTKAWLRSSKDGLL 108 small-eared galago
XP_003277614  31 AQEGTPSPPPKLKMSR-WSLVRGRIKELLEPVVNRTRDGWQWFWSPSTFRGFVQTYYDDHLRDLGPRTKAWLLESKDSLL 109 northern white-...
XP_004910125  28 TSAEDPSPRTGPEQSS-WGL--SRLRGLVEPMVTKTRERWQWFWGPEAFQGFMQTYYDDHLKDLGPRTQAWLISSKDRFL 104 naked mole-rat
XP_006941182  65 VPAATPSMPPEPVDSP-WSLMKDKVKT----LVTRTREKWQWFWGPEAFQGFVQAYYEDHLKDLRLRTQAWLRSSRDSLL 139 domestic cat
XP_855163     31 APTESPSPPPRLVSSP-WSLVPNKVKE----VVTRTREKWQWFWGPEAFQGFVQTYYDDHLKDLTLRTRAWLRSSKDSLV 105 dog
XP_003464715  62 ASVEDLSPETDPEASS-WGL--SRLRGLVELMVIRTRERWQWFWSPGVFQDFMQTYYEDHLKDLGPRTQAWLTQSKDSLL 138 domestic guinea...
Q61268       107 NKTHSLCPRLLCKDR 121 house mouse
Q3SYR5       110 NKAHSLCPQLLCRPS 124 cattle
XP_008505048 128 NKTYSLCPQLLCGDE 142 Equus przewalskii
NP_001167603 111 NKAHSLCPQLFCGSR 125 pig
XP_003799640 109 NKAQSLCPRLLCGDK 123 small-eared galago
XP_003277614 110 NKTHSLCPRLVCGDK 124 northern white-cheeked gibbon
XP_004910125 105 NKTLSLCPRVLCRDp 119 naked mole-rat
XP_006941182 140 NKAHSLCPQLLCRDg 154 domestic cat
XP_855163    106 NQAHSLCPRLFCGDS 120 dog
XP_003464715 139 NKTLSLCPRLLCRGR 153 domestic guinea pig
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