Conserved Protein Domain Family
Nucleoporin_FG

?
pfam13634: Nucleoporin_FG (this model, PSSM-Id:290362 is obsolete and has been replaced by 463941)
Nucleoporin FG repeat region
This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Statistics
?
PSSM-Id: 290362
Aligned: 254 rows
Threshold Bit Score: 28.4506
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q8I398        324 SSTNQASTSSsNMFGgl-ssNQAKPTSSLFGGLSSGtttntstqQSGNLFGs--aTGLGQNKTGGG-------IFgtlps 393  Plasmodium fa...
Q6C8Y4        856 TPAATPSAAPsSGFSf----NKPSSEKPMFGASSTTa------pSAGGLFGgdasSTGASAPSSGG-------LFgg--- 915  Yarrowia lipo...
XP_002112447    5 TNASTPFGGNqSGFT--------ATSGGLFGQSSTNtf----gsGSTG-FGt--sTTSGFGNTGGGfgtqsksLFgn--- 66   Trichoplax ad...
XP_002470288  180 PSSATPAIGG-GISGn---tTSTTPGGGLFGNASPA--------TGNSLFGn---TGSATSALGGG-------LL----- 232  Postia placen...
XP_002258322  328 FGTANQGSTQsNMFGnassmNQNKPSGGLFGALQTTnq----gnTGSSMFGs---AAGGMSQNKGSt-----tLFggmsg 395  Plasmodium kn...
EDK36861      524 QNNQTNQNTG-STFG---------SGTSGFGQNSTT---------GGGLFG-------SKPAQTGG-------LFgnn-- 568  Meyerozyma gu...
NP_983045     234 AFGQNTGMSTnSPFG-----QGNAAANSPFGMNKTSt------tSTGGLFGqqntTGGFGQAGATGt-----gLFg---- 293  Ashbya gossyp...
XP_002258322  153 QNNQSSAPSSsNLFGnl--sSNQTSSGNMFGNLSSTnq-----sKGNSLFG-----ATSQSNQTPGs-----nMFgna-s 214  Plasmodium kn...
XP_001934904  195 QPNTTSSASSgGMFG-----TSSTAPGGMFGASSAAp-------SSNSMFG-----ASSAAPSGGG-------MFg---- 246  Pyrenophora t...
KFX46799       67 QSFPAPSASGaTQSG---------SQSLSFGAGAPAs------fNFGG-FGs--tPASNPFATLNGgnt----------- 117  Talaromyces m...
Q8I398        394 anQTSTTSSNMFGGLSTNQAKP---TSSLFGgmSSGTTGitt--------ntTAQSGnLFG 443  Plasmodium falciparum 3D7
Q6C8Y4        916 -aSSTPSTGGLFGNSSNTS------SAGMFG---AKPSA-------------ESSGGfKFG 953  Yarrowia lipolytica
XP_002112447   67 -tATTSASGGLFGTSGNQVNPSt-----sFG---------------------GSGFG-GFG 99   Trichoplax adhaerens
XP_002470288  233 --GNATSATPAAGATSSTTPTT---GGGLFG-----TANntananataastaTPGSG-LFG 282  Postia placenta Mad-698-R
XP_002258322  396 ntPTTAGSGNLFGNASSMNQNK---PGGVFG--NLQSPSq-----------sTTGTSnMFG 440  Plasmodium knowlesi strain H
EDK36861      569 nqNNTANNSSPFGAT----------NA--FG--ANQNQNqnqn------qnqTTTGG-LFG 608  Meyerozyma guilliermondii ATCC 6260
NP_983045     294 -qSAGTNTSTPFGQSNTFNQAGttsAGGLFG----QNTN-------------RQQSGnLFG 336  Ashbya gossypii ATCC 10895
XP_002258322  215 smNQNKPSGGLFGALQTTNQGNt--SSSMFG--SATGGMsqnk------gstTLFGG-MSG 264  Plasmodium knowlesi strain H
XP_001934904  247 -tSSATTSGGMFGASSGAP------SGGMFG-----ASS-------------AAPSGsMFG 282  Pyrenophora tritici-repentis Pt-...
KFX46799      118 qtQTQVQPSNVFGAQSSTQPVQp-sGQGVFGq--------------------SSNSG--FQ 155  Talaromyces marneffei PM1
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap