Conserved Protein Domain Family
Med27

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pfam11571: Med27 (this model, PSSM-Id:288428 is obsolete and has been replaced by 463298)
Mediator complex subunit 27
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells.
Statistics
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PSSM-Id: 288428
Aligned: 47 rows
Threshold Bit Score: 63.4226
Created: 15-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q55BX7       334 DSLWASSKYNIFKKISENSFEAISYYSAn-PNGGSILKCILSWIWSFRGLFLEECKGCQDILHLDSPqymyLPPSFRTF- 411 Dictyostelium d...
Q10477       173 FIFFHDTRGKFSVYCSSSKDDAITFSINrnNNFLGNLWSLMPKILDYQHLYSKPCDFCKSLI---SPvyleLPSVRRNA- 248 Schizosaccharom...
Q4W9T3       242 MVDWRVQELAAPGRPKTKLETAVAACLNa-RPRQWDLAYLLDMIASYSDVKQTPCVKCGKMTDNAAQ----LPSVRRPN- 315 Aspergillus fum...
Q2U0Q4       275 VPEWQVSSRTMPGQVKTKLESAVSDCLNs-RSRQWDLAYLLDMISSYSDVKQTPCVKCGRMTDNAAQ----LPAVRQQK- 348 Aspergillus oryzae
XP_001274842 241 VSDWRVMDKAVPGKPKTKLELGIMACLNa-RPRQWDLAHLLDMISAYSAVKQTPCAKCGKMTNSAAQ----LPTIRQPK- 314 Aspergillus cla...
XP_001400738 231 VPDWRVFTRTPGGQTPSKVETAVAQCLNs-RPRQWDLLYLLDMISSYSTIKQTPCAKCTKMTDSTAT----LPTIRKPSs 305 Aspergillus nig...
CBF79081     257 VPEFNVSSKSPSGEPSSRVETAVLACLNa-RPRKWDLKFLFGMISSYSNIFQTTCTRCGKMQDQAAN----LPTLRRPK- 330 Aspergillus nid...
GAD96507     241 gmgWRVSNKQSPGKPKTKLETSVSMSLNq-RPRKWDLAYLLEMISSYSEIKKTPCVKCNKMIDNTTL----LPTIRRSK- 314 Byssochlamys sp...
XP_002482680 279 pPEWRVSSRNSFGRPS-RLENAILHQLNs-RPRKWDLCYLLEYVLSYSNIRSQPCKKCNHVTGSLAQ----LPIVRKPV- 351 Talaromyces sti...
EPS30709     230 IVEWNVSKQPLPGRAPTKIEDSIVQCVNa-RPRKWDLAFVIDMISSYSDMKQTVCVKCNKLTDSSAQ----LPVIRRAQ- 303 Penicillium oxa...
Q55BX7       412 ------D----------N-----------------------YTPYH 418 Dictyostelium discoideum
Q10477       249 ------Nstvk--ptskD-----------------------ILALH 263 Schizosaccharomyces pombe 972h-
Q4W9T3       316 ------Plqssq-gqpvL-----------------------WEAYH 331 Aspergillus fumigatus
Q2U0Q4       349 ------Qqsdp--qqppI-----------------------WEAYH 363 Aspergillus oryzae
XP_001274842 315 ------Pt---------Sdgqe---------------sslqWDAYH 330 Aspergillus clavatus NRRL 1
XP_001400738 306 tpqeqgSq---------T-----------------------WEAYH 319 Aspergillus niger CBS 513.88
CBF79081     331 ------Tkepqt-dqppT-----------------------FEAYH 346 Aspergillus nidulans FGSC A4
GAD96507     315 ------TvespdgkkstT-----------------------WEAYH 331 Byssochlamys spectabilis No. 5
XP_002482680 352 ------Al---------TsagdgsapaegsgngasnelgvvWEAYH 382 Talaromyces stipitatus ATCC 10500
EPS30709     304 ------Ai---------Psaqqe-------------pqglvFDALH 321 Penicillium oxalicum 114-2
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