4KRE


Conserved Protein Domain Family
ArgoL1
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pfam08699: ArgoL1 (this model, PSSM-Id:285861 is obsolete and has been replaced by 462567)
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Argonaute linker 1 domain
ArgoL1 is a region found in argonaute proteins. It normally co-occurs with pfam02179 and pfam02171. It is a linker region between the N-terminal and the PAZ domains. It contains an alpha-helix packed against a three-stranded antiparallel beta-sheet with two long beta-strands (beta8 and beta9) of the sheet spanning one face of the adjacent N and PAZ domains. L1 together with linker 2, L2, PAZ and ArgoN forms a compact global fold.
Links
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Statistics
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PSSM-Id: 285861
Aligned: 288 rows
Threshold Bit Score: 31.2946
Created: 16-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4KRE_A        176 VGRSFFSPPeGYyHPLGG-GREVWFGFHQSVRPAMWKM-MLNIDVSATAFYK 225  human
Q5KAU3        210 AGRKFFTDE-DG-TPLSN-GAVLYKGFQQSFRWTSAGFpAVQIDTAYSAFVE 258  Cryptococcus neoformans
XP_002952894  403 LGRGYYYPGdGV-EPLTG-GAEVWKGFQQSFKLVESGL-MLNLDSSFAAFMs 451  Volvox carteri f. nagariensis
XP_001698906  359 VGRGFYYGGeGV-MPLGG-GAEVWSGFQQSFKAVQAGL-TLNLDSSFAAFMs 407  Chlamydomonas reinhardtii
XP_005847187   73 VGRAFFFHDdqv-rsI-GgGAEVWLGYQQSLRPCQTGL-ALNIDMAATAMLE 121  Chlorella variabilis
XP_002906081  253 VGRNLFNGNga--ksL-GeGAELWFGYFQSLRATQNRL-VVNLDLAATAFVE 300  Phytophthora infestans T30-4
CBJ30598      273 VGRSFFT-Pdmp-spI-SgGAEVWLGYYQSLRATQAGL-TLNVDMSAMAFVR 320  Ectocarpus siliculosus
EJT46021      557 TGNKFYTMD-GS-RPLPQ-GAMVCKGFLQSFRYSNSAVpLINIDLGFSAFLQ 605  Trichosporon asahii var. asahii CBS 2479
CDW96997      214 AARKFFDVT-RP-IFISQ-GAEILPGFFQSARPCAAGL-VINLDPAYSPFVa 261  Sporisorium scitamineum
CCF50705      231 AQRKFYDPS-KA-IPISQ-GAEIWPGFFQSARPCAAGL-VVNLDPAFSAFVg 278  Ustilago hordei
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