Conserved Protein Domain Family
PAXNEB

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pfam05625: PAXNEB (this model, PSSM-Id:283315 is obsolete and has been replaced by 461696)
PAXNEB protein
PAXNEB or PAX6 neighbour is found in several eukaryotic organizms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Statistics
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PSSM-Id: 283315
Aligned: 74 rows
Threshold Bit Score: 314.885
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9USP1        13 P-TNLPTGVRLSSKDARWITSSGSSSFDYYLsGGIPMKSLLVIEED-SMDYASVLLKFFAAEGLKQDH-VIWLGPs---- 85  Schizosaccharom...
Q54XS0        43 A-KKLPNGCKISIKNSNLLTSTGLTDLDDIIgGGIPIGSILMIEEDiNSSYYMFLLKYFLAEGVLQQQgVFFSSLig--- 118 Dictyostelium d...
XP_002121089  15 S-GVVIPGTHPSLHNGLLLVSTGIPSLDVVLgGGLPVGSIMMVEEDlFGRFSKIILKYYLAEGVMCNHsLFVASFed--- 90  vase tunicate
XP_002316217  18 VsAPQLPGIKCGP-NGTFFVSSGIPDLDKILgGGFPLGSLVMIMEDaEAPHHMLLLRNFMSQGLVQNQpLLYASPak--- 93  black cottonwood
XP_010646438  19 P-APQAPGLKSGP-NGTIFLSSGIPDLDKILgGGFPLGSLVMVMEDtEAPHHMLLLRNFMSQGLVHNQpLLYASPsk--- 93  wine grape
XP_010312664  19 A-TAQIPGVKLGP-NGTSFLSSGIPDLDQILgGGFTLGSLVMVMEDpEAPHHMLLLRNFMSQGLIHKQpLLYASPer--- 93  tomato
KHN10652      18 V-TSQNPGLKHGP-NGTMFISSGIPDLDKILgGGFSLGSLVMVMEDpEAPHHMLLLRNFMSQGLVQKQpLLYASAsr--- 92  Glycine soja
XP_004993576  12 qarKPPPATKPSLANGQLLTSTGMDAIDHLLgGGVAVGSVFLIEAQaKSPYADVVLKYFLSQGICHNHhVTLMSAdt--- 88  Salpingoeca ros...
XP_002884837  20 S-SPQIPGLKSGP-NGTAFISTGIRDLDRILgGGYPLGSLVMVMEDpEAPHHMDLLRTFMSQGLVNNQpLLYASPsk--- 94  Arabidopsis lyr...
XP_006679558  18 A-HKKLPATRVSAHNGQTLTSTGIPSLDDTFgGGLPLGSLLLIKEDrFTGYAMLALKYYMAQGIASNHaILFASGsttan 96  Batrachochytriu...
Q9USP1        86 -------------------------iGEMWFRQLPGDSDr------P-----------NKNENSAGEDNHSsPpsknpQQ 123 Schizosaccharom...
Q54XS0       119 ------------------------idPFEILNKLPARITkeeeieaD-----------KNDTTNNINTNINtNnnnkqPT 163 Dictyostelium d...
XP_002121089  91 -------------------------kNEEILTQLPKPVT-------K-----------DILTGSK--------------T 113 vase tunicate
XP_002316217  94 -------------------------dPRGFLGTLPCPSS-------S-----------KDDKSRNHDTe---------QE 121 black cottonwood
XP_010646438  94 -------------------------dPRAFLGTLPSPVL-------S-----------KDDRSHNRDpe-------qlQE 123 wine grape
XP_010312664  94 -------------------------dPRGFLGTLPSPMA-------S-----------KEEKSNERps---------eQD 121 tomato
KHN10652      93 -------------------------dPKSFLGTLPSPAS-------P-----------KGDNKSsd----------lsHE 119 Glycine soja
XP_004993576  89 -------------------------dPSKFLKSCPRSVD-------T-----------LNIPESASVEK---------PE 116 Salpingoeca ros...
XP_002884837  95 -------------------------dPRGFLGTLPHPAS-------S-----------KEDKSTAPDp---------dQG 122 Arabidopsis lyr...
XP_006679558  97 tasdldpifsdlmavvkpsagheqddGSSGVDYVPLPSG-------SimtpkftralgALRSSSRGSVSAI-PsassdSS 168 Batrachochytriu...
Q9USP1       124 ERMKIAWRYEq-----V----SKTkAPTLDmi---ppGYTHSFDLSKNLIVKSdMKYAVSPFPle--------tgSNP-Y 182 Schizosaccharom...
Q54XS0       164 DELKIAWRYQqyvsneLs---KQQqQQSAStim--nqTFCHSYDFTRKMNVQSmNPELIHTLShdaq----sqaeGTSpY 234 Dictyostelium d...
XP_002121089 114 DDMKIAFRYRd-----Ls--tATNsLDAp-------pKYGHYYDISRTMDKIDyEHCGITTLNlnkliredtvvpVSTmL 179 vase tunicate
XP_002316217 122 KGLRIAWQYKk-----Yfs-eNQKnIDDHKds---nqEFCNDFDLRKPLEKHFySGQRVDCVSi----------kDSPnL 182 black cottonwood
XP_010646438 124 KGLRIAWQYKk-----Yfg-eHRPnFDSHRdt---khEYCNDFDLRKPLERYFlTAQNICCLSi----------qDPPnL 184 wine grape
XP_010312664 122 ANLRIAWQYKk-----Yf----gEqTEVQRgg---kaEYCNDFDLRKPLERHFySGQRVDCISl----------rDSPnL 179 tomato
KHN10652     120 KDLRIAWQYKk-----Yfg-ePQLnLNTNNgg---qhDYCNDFDLRKPLDRHFfSGNNVDCVSi----------kDSPnL 180 Glycine soja
XP_004993576 117 KDMKIAWRYKn-----Lp---KVSsVVGTAsrttfstKFCHTFNLSQQVEEKDlSNDTIHTADlri-------skSGNtF 181 Salpingoeca ros...
XP_002884837 123 ESLRIAWQYRk-----Y--------LESQKns---idDYSNDFDMRKPLERQFlSGRPIDCVSl----------lDSSdL 176 Arabidopsis lyr...
XP_006679558 169 DQLDIAWRYQa-----MpkfnSQVsNSVQSss---gqLYCRVFDLTKRIDPELlTRSSIQCYNgpsl-----svdSPNmF 235 Batrachochytriu...
Q9USP1       183 APVIESLTRFLSTl---T-P------GT------VCRLVLPSILSPAFy--------------sIRATHPQHFIR----- 227 Schizosaccharom...
Q54XS0       235 RNLFLEIQNLVYKynkeA-A------MNpdq-trVLRLCIQSFSSPLW------------------SNDEEGVIE----- 283 Dictyostelium d...
XP_002121089 180 RSTLNKLNTIASDiqhtA-PksivakTKl----nIIRAAIPGLGSPLWc--------------eNTEDNVSSIAR----- 235 vase tunicate
XP_002316217 183 ATLHDRCATFLAQfprnD-G------SFs----cMGRIAIQSLCAPQC----------------ELSKMDWDMLS----- 230 black cottonwood
XP_010646438 185 AAFRDCCAKFLAQfsrnN-S------SIs----cAGRVAIQSFCAPQC----------------EYSNMEWDMLS----- 232 wine grape
XP_010312664 180 VPLLERCSTFSAQisksD-G------NIt----cAGRIAIQSLCSPQC----------------DFSDKDWEMLS----- 227 tomato
KHN10652     181 TALQDCCAGFLAKfsrnE-G------SIs----sAGRIAIQSFCSPQC----------------KYSNEEWHMLS----- 228 Glycine soja
XP_004993576 182 ADAMQLILEAVEPfrmvPqP------GPlvs-aaVHRIGVHRLGSSAWdlgatdkdddggggynDDQYSVEERVQaa--c 252 Salpingoeca ros...
XP_002884837 177 SVAQDHCSTFLSKfsrsS-S------NIa----sIGRIAIQSFSSPLC----------------EYSDKESDMLS----- 224 Arabidopsis lyr...
XP_006679558 236 RNLLEKIQSAIVDggfsT-C------GDtekaqtLLRIAIRSFVSPEW----------------TVSNDPESLLYikeac 292 Batrachochytriu...
Q9USP1       228 -FIHTLSSLIKctTSvHLICMCSVPSTLFs-----rDCEQIFWLENLASAVFSLHPFPVkETVNGLVTQ-----PLGLFR 296 Schizosaccharom...
Q54XS0       284 -FLHALKGLLR--SS-VATCVISVPTYIY-------SGAFVKKIAHLCDTVVSINSFSG-LGGETPEQFa---eYLGLFN 348 Dictyostelium d...
XP_002121089 236 -FLHALRALAR--NS-LMTCVVTVPTHLY-------TPHQVNVIRHMVDCSIELESF---SKEKTNPVFs---qFHGLIR 298 vase tunicate
XP_002316217 231 -FIRSLKSMLR--SA-NAVAIITFPSSLL-------SPSFCKRWQHMADVLLSVKAIPDe-DKELGKLLtgyqdMVGFLN 298 black cottonwood
XP_010646438 233 -FIRSLKGMIR--DS-NAVAVITFPPSl-------lSPSSSKRWQHIADTLLSVKAIPDe-DKELANLLtgyqdMVGLLN 300 wine grape
XP_010312664 228 -FIRSLKGMVR--SS-GAVAVISFPPSLV-------SPAFLKRWQHLADTLISVKAIPDe-DKELAKLLtgyqdMLGLLS 295 tomato
KHN10652     229 -FIRSLKGMAR--SS-NAVIVVTFPPSLLp-----pSCS--KRLQHMADTLLSVKAIPDe-DKELAKLLtgyqdMIGLLN 296 Glycine soja
XP_004993576 253 aFLHQLRGIAR--RS-CAVVFVTVPSSLLs-----sSPHHRHRIHLLADAVVRMEGFAGtSN-EHHPALk---eYHGFFK 320 Salpingoeca ros...
XP_002884837 225 -FIRLLKSMLM--VS-NAVAIVTFPPSl-------lSPSSSKRLQHMADTLLSIKAIPDg-DKELEKLLtgykdINGFLN 292 Arabidopsis lyr...
XP_006679558 293 lFLHSLKSILR--NT-QAVCVVTVPAYLYedfyrirADPLIRRLEYTADAVIEIESFAG-SPKPVNPLYat--eYHGLIH 366 Batrachochytriu...
Q9USP1       297 IHKLPLAlpftnhansNE-----------AGDLSFTVSKRR-F-TIEPWVLPPLDDEQkDTKISntNPQKQ-PV-KSLD 360 Schizosaccharomy...
Q54XS0       349 IRKIARL---------NTlsls---fhpdMLTFVFKMKRRK-M-CIETIHLPPESSRA-GDSKPdnNDSNKnksdqnni 412 Dictyostelium di...
XP_002121089 299 LKKLPCL---------NSlvpf----ipqSLDLGFELKKTK-F-QIKCLHLPPDMSDG-AAESDgkTQKSPcDS-NTLh 360 vase tunicate
XP_002316217 299 VHKIARI---------NTqvpm----ileATTFSIKLHKRR-FlVLECLNQAPIDGSS-GTsygtsggcsgssrsgald 362 black cottonwood
XP_010646438 301 VHKVANV---------NTqvpv----ileATTFSIKLQKRRyL-VLECLNQAPVDGSS-GSSYAstGSCSGsTKtGTLD 364 wine grape
XP_010312664 296 VHKVARI---------NTqvpa----ileATTFSMKLRKRRaL-VLECLNQAPVDGSS-GSSYGtsGACSGsSKtGNLD 359 tomato
KHN10652     297 VHKVARL---------NTqvpv----ileATTFSIKLQKRR-FlVLECLNQAPVDgssgssygtsggcsgstkagpldf 361 Glycine soja
XP_004993576 321 VLRMPQL---------NSlvaa----tpdTADLVFKLKKKQ-F-VIEKFHLPPELSDM-PSRPQedAPVTPssssssss 383 Salpingoeca rosetta
XP_002884837 293 IHKVARI---------NTqvpv----ileAKTFSMSLKKRR-FlALECLNQAPVDGSS-GTSYGtsGSCSS-KS-GALD 354 Arabidopsis lyra...
XP_006679558 367 PHRTFGL---------NShketsrlspveLHSLAFKVRRKR-F-LIETFTLPPEDAQD-ESNESksAKSSAgqetntsr 433 Batrachochytrium...
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