1NG9,1NNE,3THW


Conserved Protein Domain Family
MutS_III

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pfam05192: MutS_III (this model, PSSM-Id:282977 is obsolete and has been replaced by 461579)
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MutS domain III
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterized in.
Statistics
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PSSM-Id: 282977
Aligned: 1287 rows
Threshold Bit Score: 37.892
Created: 11-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NG9_A        272 ATRRNLEI-TQN-LA----------GGa-----ENTLASVLDCTV-TPMGSRMLKRWLHMPVRDTRVLLERQQTIG--Al 331  Escherichia coli
A0DMV3        527 QALESLEIfDVNlQT----------KVs----sKGSLFEYLNKCV-TPFGKRLLTKWVQSPLLNHKHIRERQDCIRdlMd 591  Paramecium te...
A0E9T1        508 QTLESLEIfDVNlKT----------KVt----nSDSLFSYLDRCS-TYPGKRLLTKWVQSPLQNYNSIIERQQCVKelCn 572  Paramecium te...
A0BJK4        523 QALESLEIfNVNlQT----------KIt----tAGSLFDYLNRCA-TAPAKRLLTKWVQSPLQNYKLIIERQECVQelTn 587  Paramecium te...
Q9N3T8        576 TALENLNI-----VPngrd---shlT---------SLYYVINKCS-TPFGRRLLRSWLLQPTCDPKKLEQRQKAIK--W- 634  Caenorhabditi...
CBY23144      559 ATLINLGV-----------------TQgddgteRGSCLRKLD-TCcSAGGKRKLWETVISPPANPDVIRHRQKCIK---- 616  Oikopleura di...
ETO15829      592 ATMVNLEI-----LRnee-----ghT-------KGTLFSFVDRCL-TAFGQRKLKEWVSFPLRHIPSISQRLDCVQ--F- 650  Reticulomyxa ...
XP_004036389  415 HAIENLDI-----FEvnqitkiqeeG---------SLLDFLDYTK-TKFGKRKLKKWLMYPLKNIKQIQERQTTVQ--E- 476  Ichthyophthir...
XP_001021635  750 HAIENLDI-----FEvnlqnrvtseG---------SLMSFIDYTK-TQFGKRMLKRWLSYPLKSIQQIEQRQEAIE--D- 811  Tetrahymena t...
XP_001322723  465 SALTNLQI-I---------------GKd-----PHCLINILDHCT-TPFGRRRLRFWIMHPLRSINQIEERQKAVE--E- 519  Trichomonas v...
1NG9_A        332 qdFTAG----------------------------------LQ-----PV---LRQ-VG---DLERILARLAL-------- 357  Escherichia coli
A0DMV3        592 --F-------------------------------------IEpcdefQRr--IRS-IP---DLERNIIRCFN-------- 618  Paramecium te...
A0E9T1        573 --F-------------------------------------LPqcyefQKk--ISS-LP---DLERAIIRCFN-------- 599  Paramecium te...
A0BJK4        588 --L-------------------------------------IPkcaefQRr--IKS-LP---DIERAIIKCFN-------- 614  Paramecium te...
Q9N3T8        635 --L--Vspda--------------------------ssfmTTa---tAT---LKK-IP---DLDRLLQKIHT-------- 666  Caenorhabditi...
CBY23144      617 --AL------------------------------------MDnqefcKDarkLISgFP---DLARLISRFGNlsigirps 655  Oikopleura di...
ETO15829      651 --FVNGlyhdvdrnqsktmtssldnkfrlgdktsdpfssmAFlqevsAK---MKT-LP---DLLRMLTRISA-------- 713  Reticulomyxa ...
XP_004036389  477 --I--Leni----------------------------nyfEDf---lKK---IQL-LG---DLERNLSKVFN-------- 506  Ichthyophthir...
XP_001021635  812 --L--Mkie----------------------------dviEQf---dKK---LSK-LG---DVERQISKIFN-------- 841  Tetrahymena t...
XP_001322723  520 --LMKP----------------------------------DF-----NT---LSKeLKtipDLERMLSRVYS-------- 547  Trichomonas v...
1NG9_A        358 ------------------------------------------RT--A-R--------------PR--D------------ 364  Escherichia coli
A0DMV3        619 -------------------------------------------TihShKlkavpisggesfgkVKlkE------------ 643  Paramecium te...
A0E9T1        600 -------------------------------------------TihShKlkavp-----scgkTKlkE------------ 619  Paramecium te...
A0BJK4        615 -------------------------------------------TihShKlkavpitggesigkTKlkE------------ 639  Paramecium te...
Q9N3T8        667 -------------------------------------------I--GlK--------------YRseKhpdsraiffdti 687  Caenorhabditi...
CBY23144      656 dhpdkravmyeeilynrqktrsfcrvlssfkdfdawikkqsaTNenllkilqlvdneniviedllanwrktfdmekakre 735  Oikopleura di...
ETO15829      714 -------------------------------------------L--GtS--------------R---Amdraimfdnawn 731  Reticulomyxa ...
XP_004036389  507 -------------------------------------------S--SqF--------------S---Rlnpssfdnf--s 522  Ichthyophthir...
XP_001021635  842 -------------------------------------------S--SqK--------------S---Rlkptsfenf--s 857  Tetrahymena t...
XP_001322723  548 ------------------------------------------NK--C-S--------------VK--Vf----------- 555  Trichomonas v...
1NG9_A        365 -------LARmrhafqqlpelraqletvdsapvqalrekmgefaelrdlleraiidtppvlvrdggviasgyneeldewr 437  Escherichia coli
A0DMV3        644 -------ITQvikhikaasetfkvfenylhnfksnklkkilsykenitilntalkelekciqiqdgepqpvkgvspeydq 716  Paramecium te...
A0E9T1        620 -------IKNvlsnvrqaaeafkifdqdnnnfksqklqdifnykqntqilkqslnelekclnmednepkpiqgasseyde 692  Paramecium te...
A0BJK4        640 -------IKNvlshirqaaeafkifdqdikqlkskklkeilnyrqnakilkdsldelekcmtmddnepkpvkgvspeydq 712  Paramecium te...
Q9N3T8        688 ktnqkkiAELlaaidgfklcnklrkeyikvqkegegcelldellgneqemeevdeniyffekmfdrstamkdgkivpnag 767  Caenorhabditi...
CBY23144      736 ekltpkeganppfdravkeikriq-------------------------------------------------------- 759  Oikopleura di...
ETO15829      732 rskvktfCHClnaletsheifklfeahrstwqhldllvrlmsfgpqlpdfseilnhfkngfdsreasstgvirprsslnp 811  Reticulomyxa ...
XP_004036389  523 hqrlkesFLFiknlkilhqnflefplkefssnilknifqkqdlpklldliqkienqlfqdengncfpkpgidptydeilk 602  Ichthyophthir...
XP_001021635  858 nvrlkdaYSLvedlknleeillifkdyqdnfnstklkklvtvkdpeqinkilestrqknnsqtylsqkllnrqsstnsks 937  Tetrahymena t...
XP_001322723  556 -------IDClgalkkccqfftkiegtvkspllanvvppgkgkslakqiddilaeleveksiqsnefivkkgvfkdiddi 628  Trichomonas v...
1NG9_A        438 a-----------------------------------------------ladgatdylerlevrerertgldtlkvgfnav 470  Escherichia coli
A0DMV3        717 a-----------------------------------------------fdkmtdiidsleqelkkwqtklkcpqisyhhg 749  Paramecium te...
A0E9T1        693 t-----------------------------------------------ltkitditdslqdelekwksklkcpdiiyyhs 725  Paramecium te...
A0BJK4        713 t-----------------------------------------------ldrlneitdslqdelekwkkklkcpeivytha 745  Paramecium te...
Q9N3T8        768 cdee-----------------------------------------ydealnrvkealnelndykdsvakkyscsikfvds 806  Caenorhabditi...
CBY23144      760 ----------------------------------------------------------neaevfrtevadnyghakllks 781  Oikopleura di...
ETO15829      812 eydqcla-----------------------------------hqqicrqrledlvqqykvslneptiglislkgknnkfl 856  Reticulomyxa ...
XP_004036389  603 n-----------------------------------------------meqikdemnqevnkwrqklknldikliktrlq 635  Ichthyophthir...
XP_001021635  938 kqqiivgifpdlkpfveliqsqleqdeqgycqpkqgadavydeivfkmkkiykkmnnealvwrkkfnnnqdiklikskmq 1017 Tetrahymena t...
XP_001322723  629 d----------------------------------------------eevssieddlndilrdikrevgckdlsyvnmqs 662  Trichomonas v...
1NG9_A        471 hgyyiqisrgqshlapinymrrqtlknaeryiipelkeYEDK-VLTSKGKALALE-------KQLYEELFDLL-LP-H-- 538  Escherichia coli
A0DMV3        750 kiryqieipdqclesnqkpkelvitskkkgfqrfqtdfIEQQ-IFHLK----VVE-------DELSQKLIPFI-ND-Yft 815  Paramecium te...
A0E9T1        726 kiryqmqipenqlsnkqkhkeliitsktpeyerfqtpfIEEQ-LHQLK----LAE-------HELSQKLLPFI-NE-Yft 791  Paramecium te...
A0BJK4        746 rmkyqleipekylegnqkpkeliitskrqgfqrfqttfIEEQ-LYKLR----KVE-------DELSQKLLPFI-NE-Yft 811  Paramecium te...
Q9N3T8        807 gkvkyllempentkvsssfelksrrkgfirystpdseqLVAA-LDAVEKEKSKLG-------DDATRRVFEQF-GH-K-- 874  Caenorhabditi...
CBY23144      782 gklhfviqvrdtvktpnewtsigltkgfkkyqapeldvLNKEmSRYI-----NLKdmalseaSS---VIFGEFyKT---- 849  Oikopleura di...
ETO15829      857 lqlpknfltqnskfipnnwtqanstkatvrfrvpsiteIANA-YEELKNKEEMIL-------RDSARCVFANF-AE-Y-- 924  Reticulomyxa ...
XP_004036389  636 yeiqvpesivqgqlkpkefsltskvkgyqrfqteqiiqLLKK-IKTEEINIQKAL-------APFCITFFHQF-FS-Q-- 703  Ichthyophthir...
XP_001021635 1018 weiqipeklvegskkpkelyltskvkgyqrfqtdkiisLCAK-LKKVEVQLQKAL-------SPFCERFFHLF-YQ-N-- 1085 Tetrahymena t...
XP_001322723  663 ekfqvqipvkycsdlpdkyilmsqtksvrryhtpeikeKLKQ-LDIVENERQKLR-------SGSQKRFIDEF-AKnS-- 731  Trichomonas v...
1NG9_A        539 ------LEALQQSASALAELDVLVNLA 559  Escherichia coli
A0DMV3        816 kfysyrKEFLQLISL-LSEADCLISLA 841  Paramecium tetraurelia
A0E9T1        792 kfysyrKEFLQLISF-LSEADCLISLA 817  Paramecium tetraurelia
A0BJK4        812 kfyshrKEFFQLISY-LSEADCLISLA 837  Paramecium tetraurelia
Q9N3T8        875 ------NPIWLETVKLVSSFDVLTSLA 895  Caenorhabditis elegans
CBY23144      850 ------SNRWLAIVRMIDELDALISFA 870  Oikopleura dioica
ETO15829      925 ------SHIWKKVVNSLAELDCLMSLA 945  Reticulomyxa filosa
XP_004036389  704 ------RDFFYKILNSLSDLDALFSLA 724  Ichthyophthirius multifiliis
XP_001021635 1086 ------RELLYQAVNCIGELDCLCSLA 1106 Tetrahymena thermophila SB210
XP_001322723  732 -------PIWDSIVDAIADIDCLISLA 751  Trichomonas vaginalis G3
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