Conserved Protein Domain Family
Leo1

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pfam04004: Leo1 (this model, PSSM-Id:281933 is obsolete and has been replaced by 461126)
Leo1-like protein
Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors.
Statistics
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PSSM-Id: 281933
Aligned: 135 rows
Threshold Bit Score: 115.742
Created: 25-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5KL25       121 WQMKFPAYVNLDPKPFDPDLYRA-TQ-EEEPIDGaadPIAAKSMMIGVKNTIRWRWVTgpdgePVRQSNARMLRWSDGSV 198 Cryptococcus ne...
XP_001558509  96 HTFRLPKFFGIEPREYNPETFEI-PV-SDH-HVSt--QSANFSARNVAESTIRYRKSd----sGKLESNTNIYTWSDGSA 166 Botryotinia fuc...
XP_001908634  86 HNLKVPNFLKFNPVEYKPDEWQPsKW-ELNN-----------ANSENPIPSIMWRRDHk---tGKLKSNANIHRWSDGST 150 Podospora anser...
XP_003709975  86 RILKVPQFMKIVPEQYNEDSYEP-T-----AWDLs--ED----KKKYPASVIRWRKNPe---tGKLESNANIYRWSDGSI 150 Magnaporthe ory...
XP_007293790  87 naLRLPAFLGIEPHKFDSNTFQPpTS-DHHSTV----RSAKFSASAVSSSTMRYR-VGs---nGKLESNTVVYKWSDGST 157 Marssonina brun...
XP_008077142  91 NSLRLPKFLGIEPHLYTRDSYKV-KM-TDH-HSNv--ASANFSASATAATTMRHRKDa----aGNLESNTIVYKWSDGST 161 Glarea lozoyens...
XP_003658702  90 HSLRVPDFIKFKPMEYKSDEWQPsKW-DLDN-----------ANSENPIPSIMWRRDPa---tGRMQSNANIYRWSDGSV 154 Myceliophthora ...
CCU76773      87 stLRLPKFLGIEPHAYDSTNFIP-PSsDHHSEs----KSANFSASSVALSTIRYRRDSk---tGELESNTNLCKWSDGST 158 Blumeria gramin...
XP_009222126  80 RTMRIPDFLRVVPEQYKEDTYQP-T------EVDl--AEDR---KKYPASAIRWRRNLe---tGKPESNAAIYRWSDGSV 144 Gaeumannomyces ...
EGZ77317      94 YSFKVPDFIKLNPLEYNADTWEPsKW-DL-----------RNARAETPIPSVMRRRDPk---tGKMQSNTNIYRWSDGSV 158 Neurospora tetr...
Q5KL25       199 TLQLGDDFYDVAPSQGatlarpsdpqpvrkrddkpatN------------SSTT--FLCVG---------AAAERVLVTE 255 Cryptococcus ne...
XP_001558509 167 TLAIGDQHYELQSKPL---------------------Apakdsk-ynevlDSHS--YMASP---------SVTSQILVVV 213 Botryotinia fuc...
XP_001908634 151 TLQIGDDHYEITSNSLvgppne----------pyqdvK------------DAHE--YAAAA---------HLTTNSLLIV 197 Podospora anser...
XP_003709975 151 SVAVGDQHYDMDAKSLaptgk-----------gydekR------------DANY--YAAAG---------HLSTEAFLTV 196 Magnaporthe ory...
XP_007293790 158 TLSIGDQHYELQTASLapskeg---------knyesvK------------DSHQ--YLASP---------SLHSQLMVVV 205 Marssonina brun...
XP_008077142 162 TICVGDQHYELQTKPLapprds---------kpylevR------------DSHS--YLATP---------SMTAQLLGIV 209 Glarea lozoyens...
XP_003658702 155 TLAIGDEHYEIQSKPLappsnk----------pyrevQ------------DAHY--YAAAA---------HLTTNSLLIV 201 Myceliophthora ...
CCU76773     159 TISIGDQHYELETKTL---------------------AppadskpyqevmDSHT--YLATP---------SIASQLLLLI 206 Blumeria gramin...
XP_009222126 145 TLAVGDQHYEVDVKSLappak-----------sydarR------------DANY--YAAAA---------HLSSNMMLSV 190 Gaeumannomyces ...
EGZ77317     159 TMAVGDEHYEIQSKPL---------------------A------------PPPNkpYQEVQdahyyaaaaHLTTNSLVII 205 Neurospora tetr...
Q5KL25       256 RPIAGQLSLLPT-SMTSKTYLELVKHVGKQH--T-----KH----S----KM-KMLEE-TQDEEALQA 305 Cryptococcus neoformans
XP_001558509 214 GHMTNEYTVRPNkSIEDDALNRLKKNLTAATglE-----GGe---K----KR-LNMIVkNEDPELQKK 268 Botryotinia fuckeliana B05.10
XP_001908634 198 GHYTEQYSIKPPeELQDAAFDRLVAGL-NMN--K-----KEs---T----TS-RLIAT-NEDPERKKR 248 Podospora anserina S mat+
XP_003709975 197 GHITEELKVRPNeALEAAAVDRLMAKMDEAT--Kh----RHt---Q----DD-VIFRA-TEDPELQRK 249 Magnaporthe oryzae 70-15
XP_007293790 206 GHMTNQYTVRPNkDIQDDAVENLQKNLAAAA--R-----GGk---RddknGP-ELITN-TEDPELQKR 261 Marssonina brunnea f. sp. '...
XP_008077142 210 GHMTNEYTVRPNkDVEDDALDRLQKSLAAAA--R-----KGgndkN----GP-ELIVN-QEDPELQKK 264 Glarea lozoyensis ATCC 20868
XP_003658702 202 GHLTEQYTVRPNkELQDHALERLKADLAGA---K-----RDr---S----AE-MIIVT-NEDPELQKK 252 Myceliophthora thermophila ...
CCU76773     207 GHTSNQYTVRPNkEIEDDALEKLQKSLAAAT--RggskgDDk---G----GP-ELITN-VEDPELQKK 263 Blumeria graminis f. sp. ho...
XP_009222126 191 GHITEEYKVKPNaALENAAVDRLMATMDAAT--K-----NRh---A----DEgVIFRA-AEDPETLRK 243 Gaeumannomyces graminis var...
EGZ77317     206 GHFTEQYMLRPNkNIQDHALERLKAELATA---K-----KEr---G----PD-MIILA-KEDPELQKK 256 Neurospora tetrasperma FGSC...
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