3GGZ


Conserved Protein Domain Family
Ist1

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pfam03398: Ist1 (this model, PSSM-Id:281401 is obsolete and has been replaced by 460910)
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Regulator of Vps4 activity in the MVB pathway
ESCRT-I, -II, and -III are endosomal sorting complexes required for transporting proteins and carry out cargo sorting and vesicle formation in the multivesicular bodies, MVBs, pathway. These complexes are transiently recruited from the cytoplasm to the endosomal membrane where they bind transmembrane proteins previously marked for degradation by mono-ubiquitination. Assembly of ESCRT-III, a complex composed of at least four subunits (Vps2, Vps24, Vps20, Snf7), is intimately linked with MVB vesicle formation, its disassembly being an essential step in the MVB vesicle formation, a reaction that is carried out by Vps4, an AAA-type ATPase. The family Ist1 is a regulator of Vps4 activity; by interacting with Did2 and Vps4, Ist1 appears to regulate the recruitment and oligomerization of Vps4. Together Ist1, Did2, and Vta1 form a network of interconnected regulatory proteins that modulate Vps4 activity, thereby regulating the flow of cargo through the MVB pathway.
Statistics
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PSSM-Id: 281401
Aligned: 132 rows
Threshold Bit Score: 141.049
Created: 25-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3GGZ_B         13 KTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDIST 92   baker's yeast
XP_006853993   12 KTSLKLAIARIKLMKNKKGVQLKQMKRELAQLLQAGQEQNARIRVEHVIREENTRAAYDIIELFCELIVARLPIIESQKH 91   Amborella tri...
XP_003524418   11 KTALTLAVPRIKLLKNKREANVKQLRRELAQLLHSGHNHAARVRVEHVVKEEKTMAAYDLIKIYCDLIAARMPMIESQRN 90   soybean
XP_002514165   12 KTALKLAVSRIKLLKNKRDAQVKQLKRELAQLLESGQDRTARIRVEHVVREEKTLAAYDLIEIYCELIVARLQIIESQKN 91   castor bean
CDM83721       22 KIALKMAMARIKLLRNKKEVQVRQMRREVAQLLDGNQDQTARIRVEHVIREEKFMQAYDLIEVYCELIVARMSIIDSQKT 101  bread wheat
XP_009401974   21 KTSLKLAVSRMKLLKNKREASVRQMRRDLAQLLESGQEQTARIRVEHVIREEKTMAAYDLIQIYCELIESRLPIIESQKN 100  wild Malaysia...
XP_009103065   18 KTSLNFAIARMKLLQNKRDMHLKHMKKEIAQFLQAGQEPIARIRVEHVIREMNLWAAYEILELFCEFVLARVPILESQKE 97   field mustard
XP_004236982   18 KTCLTLAISRIKLLQNKRDAQLRLMRKEIAQFLQTGQEAIARIRVEHIIREQNVWAAYEILELFCEFVFARVPILESQKE 97   tomato
CDM83872       19 KTCLNLIISRIKLLRNRREMQLINMRKEMVQYLQTGQESIARIRVEHIIREQNILAAYEIVELFCEFVLARVPIVEAQKE 98   bread wheat
XP_009394434   18 KTCLNLAISRIKLLRNKRELQLKQMRKEISQYIQTGQEAIARIRVEYIIREQNILAAYEIIELFCEFVLARVPVLESQRD 97   wild Malaysia...
3GGZ_B         93 eeqlvkehMDDGINEAIRSLIYAILFVdEVKELSQLKDLMAWKINVEFVNGVIAD-HI-DVPEKIIKKCSPSVPKEELVD 170  baker's yeast
XP_006853993   92 --------CPIDLKEAIASLAFASPRCaDIPELLDVQKHFAAKYGKDFISSSLELrPGcGVNCTMIEKLSVRAPNGETKI 163  Amborella tri...
XP_003524418   91 --------CPIDLKEAISSVIFASPRCsDIPELVVVKKHIMAKYGREFVSAAVELrPDcGVNRLLVEKLSTSAPDGPTKI 162  soybean
XP_002514165   92 --------CPIDLKEAISSVLFASPRCaDVPELMDVRKHFTAKYGKEFVSAAVELrPDcGVSRLLVEKLSAKAPDGPMKM 163  castor bean
CDM83721      102 --------CPIDLKEAIASVIFASMRCsDVTELADVRKNFTSKYGKEFATSALEVrPDsGVNHLVIEKLSAGAPDVQTKT 173  bread wheat
XP_009401974  101 --------CPIDLKEAISSVIFASPRCaDIPELMDIRKQFQAKYGKDFVTAAIEVrPEcGVSRMMVEKLSAKAPDVQIKI 172  wild Malaysia...
XP_009103065   98 --------CPRELREAIASIIFAAPRCsEVPDLLQLKNLFGTKYGKEFIMVSSELrPDsGVNRTIIEKLSPASPSGETRL 169  field mustard
XP_004236982   98 --------CPSELREAVASIIFAAPRCsDLPDLLHVRNLFAAKYGKEFIAAASELrPDtSVNRTIVEKLSVGAPSAELKL 169  tomato
CDM83872       99 --------CPIELREAIASIIFASGRCsDLPELMHLRNLFTTKYGKDFVAAAMELrPDcGVNRTIIEKLSVKAPSAESKL 170  bread wheat
XP_009394434   98 --------CPLELQEAISSIIFASPRCsDLPELLHIRNLFSTKYGKEFVAAASELrPEsNVNRMIIEKLTARAPPAELKI 169  wild Malaysia...
3GGZ_B        171 LYLKEIAKTYDVP 183  baker's yeast
XP_006853993  164 KILTAIAKEHNID 176  Amborella trichopoda
XP_003524418  163 RILTAIAEEHNVQ 175  soybean
XP_002514165  164 KILSAIAEEHNVK 176  castor bean
CDM83721      174 KTLSSIAAEHNIK 186  bread wheat
XP_009401974  173 KVLNEVAKEHDVK 185  wild Malaysian banana
XP_009103065  170 KVLKEIAKEYSLN 182  field mustard
XP_004236982  170 NVLKEIAKEYNVE 182  tomato
CDM83872      171 KVLKAIAHEYNLD 183  bread wheat
XP_009394434  170 KVLKAIAQEYNLV 182  wild Malaysian banana
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