4GCW


Conserved Protein Domain Family
RNase_Z

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TIGR02651: RNase_Z 
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ribonuclease Z
Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing]
Statistics
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PSSM-Id: 274246
Aligned: 35 rows
Threshold Bit Score: 307.609
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GCW_A   2 ELLFLGTGAGIPAKARNVTSVALKLLEErrsVWLFDCGEATQHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSF 81  Bacillus subtilis sub...
O07896   6 EAFILGCGGMVPLPHRHLTSVLLRREGE---LFLFDAGEGTQVSLRRLSLRWKKISAIFISHTHADHITGLPGLLMLSSQ 82  Treponema pallidum su...
Q660C0   4 NINIIGTGGTRPLHNRYLSSVLIEYNGD---NFLFDCGEGTQMSLRKQKISWQKIKMICITHLHADHITGLLGIVMLMSQ 80  Borrelia garinii PBi
Q892B5   3 DITLLGTGGGMPTPERNLSAAILNYKGR---KILIDCGEGTQVSMKISKTGFKNIDIICITHWHGDHIVGLPGLLATMGN 79  Clostridium tetani E88
Q9UZP4   3 EVIFLGTGGIKPTPERNVPSIAIKVEGE---LILFDVGEGTLRQMEIAGLSPMKIRRIFITHFHGDHYLGLPALIQTMNL 79  Pyrococcus abyssi GE5
Q89ZN1   5 ELHILGCGSALPTTRHFATSQVVNLREK---LFMIDCGEGAQMQLRRSRLKFSRLNHIFISHLHGDHCFGLLGLISTFGL 81  Bacteroides thetaiota...
Q51834   5 SVHILGCGSALPTTHHHPSSQVIDLRDK---LYMIDCGEGVQRQFRHEKLHFGRLIHIFISHLHGDHCFGLPGFISTLGL 81  Porphyromonas gingiva...
Q82BX8   5 ELVVLGTASQVPTRHRNHNGYLLRWDGE---GILFDPGEGTQRQMLRAGVAAHDLHRICVTHFHGDHSLGLAGVIQRINL 81  Streptomyces avermiti...
Q9PK48   5 GLTILGCSSQQPTRHRNHGAYLLRWNGE---GLLFDPGEGTQRQFIYANIAPTVVSRIFISHFHGDHCLGLGSMLMRLNL 81  Chlamydia muridarum s...
Q89NF8   3 ALTFLGTSASVPSAERNHPALLVEAAGK---RILIDCGEGTQRQLLRSGAGFRRLDRILLTHAHLDHVLGIPGLFSTLGL 79  Bradyrhizobium diazoe...
4GCW_A  82 Q--GGEDELTVYGPKGIK-AFIETsLAVTKTHLTYPLAIQEIEEG-I---------------VFEDDQFIVTAVSVIH-G 141 Bacillus subtilis sub...
O07896  83 v--ARSEPLYIIGPPRTA-EYVETsRRILDMYINYEIIVKEVIEPqvvy---------------rgkdFQVRCFCLDH-T 143 Treponema pallidum su...
Q660C0  81 SgeTRKEPLIIAGPVGIK-NYTKTnIDILKIYKNYEIIYKEIIIDkTekiiy------------edktKKIEYTRLKH-S 146 Borrelia garinii PBi
Q892B5  80 S--GRKEPLTIIGPVGIG-EIIKG-LTVIVPYIPYELNVIEATKEsLcftinkenlllsskgE-----IIINTLEVEH-S 149 Clostridium tetani E88
Q9UZP4  80 W--KRKEPLHIYGPENSI-EFIKNlLNSGYFAPSFDVTVHELPGKaR----------------LQFEKYEVWAFEVSH-G 139 Pyrococcus abyssi GE5
Q89ZN1  82 LgrTA--DLHIHSPKGLE-ELFAPlLSFFCKTLAYKVFFHEFETKep-------------tlIYDDRSVAVTTIPLRH-R 144 Bacteroides thetaiota...
Q51834  82 LgrTG--TLHVHGPEGIE-RFLSPiLEQFCHRMPYQVEIHTIDASrh-------------alVHEDKSVKVYSIPLSH-R 144 Porphyromonas gingiva...
Q82BX8  82 D--RVPHEITAHY-PGSGqRFFERlRYATAYRETVALTEAPVAADgV---------------IADTPAYVLETRRLSH-P 142 Streptomyces avermiti...
Q9PK48  82 D--KVSHPIHCYY-PASGkKYFDRlRYSTIYHETIKVVEHPISSEgI---------------VEDFGNFRIEARQLDH-L 142 Chlamydia muridarum s...
Q89NF8  80 R--QSSDVMTIHGGPGTLdIVIRMlAGLWGAGRAPIPVEFAALSEgQ---------------VIDAGGFTIDCFPVRHrD 142 Bradyrhizobium diazoe...
4GCW_A 142 VEAFGYRVQEKDVPgSLKADVLKeMNIPpGPVYQKIKKGETVTlEDGRIINGNDFLEPPKKGRsVVFSGDTRVSDKLKEL 221 Bacillus subtilis sub...
O07896 144 KPCMGYTLEEQDRPgSFDPRAAQdLHVPcGALWSQLQSGVAVQsAQGVTVYPEQVMGPARPGRkVSFVTDTKYLQSIAAE 223 Treponema pallidum su...
Q660C0 147 IECVGYLFIEKDKPgKFNTEKAEeLNIPkGPIRKTLQDGKEIL-IDGKIIKPSEILGESKKGLkVAYITDTGYFKELIQQ 225 Borrelia garinii PBi
Q892B5 150 SPCIAYRFDVKRKP-KFNLEKALdNKVP-KVIWNLLQRGGNVE-FEGNLYESSMVLGEERKGIkFSFVTDTLPIPELIPF 226 Clostridium tetani E88
Q9UZP4 140 VPALGYVFKEKDRRgSFDLEKIKnLGLEpGPWMKELEEKKVIN-IGGRTIRLSEVTGPKKRGAkIVYTGDTEPCENVIQF 218 Pyrococcus abyssi GE5
Q89ZN1 145 IPCCGFLFEEKQRPnHIIRDMVDfYKVP-VYELNRIKNGADFVtPEGEVIPNHRLTRPSAPARkYAYCSDTIYRPEIVEQ 223 Bacteroides thetaiota...
Q51834 145 IPAVGYLFEEKCRArHLNKAAAEfYNIP-LAEYPLIIEGSDYTtPDGRIIPNRHLTTPGTPPRrYAYCSDTEFCPSIVPI 223 Porphyromonas gingiva...
Q82BX8 143 VESFGYRLVEPDGRrMLPERLAA-HGIK-GPDVGRIQR-EGAIgG----VSLEDVS-EVRHGQrFAFVMDTRLCEGVHAL 214 Streptomyces avermiti...
Q9PK48 143 VDTLGWRITEPDTTkFISEKIKA-AGLK-GPIMQELIN-KGIIkVNNNIIRLEDVS-YTRKGDsIAVVADSLPCQAIVDL 218 Chlamydia muridarum s...
Q89NF8 143 TDSFGFVFQSPARRhLLPDRLAS-LGVPdGPLRGELAQGRPVViEDGRTIDPEDVLGPATGGRkLVVIGDTETTEGLSQY 221 Bradyrhizobium diazoe...
4GCW_A 222 ARDCDVMVHEATFAK-EDRkLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQG---DAslELQKEA--VDVFPNSVA 295 Bacillus subtilis sub...
O07896 224 VRNSDFFVCEGMFEKgMEK-DAAEKKHMTCVQAATIARDARVRLMALIHYSPRYTDh-eLK--RLLKEA--QRVFP--HT 295 Treponema pallidum su...
Q660C0 226 IKNFNLVIIESTFKNeLKK-EADKKLHLTAGGAANIVKQAKVLKTGLIHFSERYTLrkdLE--NLLKEA--KLEYPDGEI 300 Borrelia garinii PBi
Q892B5 227 VKKSDLLICESNYGQdSDVdKAIKNKHMTFSQAAQIAKSGEVKELILTHFSPAIED---PE--EFIHFA--KDIFPKAQI 299 Clostridium tetani E88
Q9UZP4 219 SRRANLLIHEATYLN-SEDr--GESYHTTVEEACEIWKKSKAFNLALFHRGPRYSFk--EY--KEGATK--LCPQAMIPR 289 Pyrococcus abyssi GE5
Q89ZN1 224 IKGIDLLFHEATFAQ-TEQvRAKETHHTTAAQAAQIALNAEVKQLVIGHFSARYEDe-----sVLLNEA--AAIFPQTVL 295 Bacteroides thetaiota...
Q51834 224 IQGVDLLYHEATFME-EDRaRAKETFHSTAKEAAEIARQAGAKRLLIGHYSGRYKDv-----qGLLEEA--QSVFKPTIA 295 Porphyromonas gingiva...
Q82BX8 215 AEGCDMLVIESTFLD-GDHqLAEDHGHLTAGQAGRVAKDAGVRHLVLTHFSQRYSDp-----dAFEREAraGGFEGELTV 288 Streptomyces avermiti...
Q9PK48 219 AKNARILLCESTYLE-EHAhLAKNHYHMTAKQAAEQAKRAEAQQLILTHFSARYNTt-----eQFVQEA--GEIFPNVFA 290 Chlamydia muridarum s...
Q89NF8 222 VADADMLVIEATFLD-RDAsIARDYGHLTAAEAAAFAAANNVGQLVLTHMSGRYEDe-----eILAEAAr---IFPNSRI 292 Bradyrhizobium diazoe...
4GCW_A 296 AYDFLEVNV 304 Bacillus subtilis subsp. subtilis str. 168
O07896 296 ILSRDQLMV 304 Treponema pallidum subsp. pallidum str. Nichols
Q660C0 301 FLTKDGMRL 309 Borrelia garinii PBi
Q892B5 300 GKDRMIISI 308 Clostridium tetani E88
Q9UZP4 290 DFDRIMVKg 298 Pyrococcus abyssi GE5
Q89ZN1 296 ARENMCITI 304 Bacteroides thetaiotaomicron VPI-5482
Q51834 296 ANERMRIDL 304 Porphyromonas gingivalis W83
Q82BX8 289 AHDLLRVPV 297 Streptomyces avermitilis MA-4680 = NBRC 14893
Q9PK48 291 AEEFCSYEF 299 Chlamydia muridarum str. Nigg
Q89NF8 293 AADFDHIVV 301 Bradyrhizobium diazoefficiens USDA 110
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