Conserved Protein Domain Family
diverge_rpsU

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TIGR02396: diverge_rpsU 
rpsU-divergently transcribed protein
This uncharacterized protein is found in a number of Alphaproteobacteria and, with N-terminal regions long enough to be transit peptides, in eukaryotes. This phylogeny suggests mitochondrial derivation. In several Alphaproteobacteria, the gene for this protein is encoded divergently from rpsU, the gene for ribosomal protein S21. S21 is unusual in being encoded outside the usual long ribosomal protein operons, but rather in contexts that suggest regulation of the initiation of protein translation. [Unknown function, General]
Statistics
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PSSM-Id: 274110
Aligned: 12 rows
Threshold Bit Score: 211.066
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAO52488           100 KIKILENSLKYVNSYGWTSEAVSKACIEMGYPPITQGILGEDSAYeLALYFVTKCNtdlmiKL--SDAE----------- 166 Dictyoste...
FlyBase:CG30493-PB 110 RAKILDAALQHVPQQGWTRQAIILGAEESGYPSVVHGMFPEGGFA-LVSHFNGKCNa----QL--VESL----------- 171 fruit fly
AAM65231            92 QARVLSASLRHVPRLGWTEEAMMAGSRDVGVSPSIVGSFSRKEAA-LVEFFMDECLq----LL--MDRI----------- 153 thale cress
AAK25258            24 EQRVLDEALRLAPKAGWNNGLVSRALSAAGLSEAEGQLLLPEGARdLAALLSRRHDa----AA--LARL----------- 86  Caulobact...
AAS14534             3 QKLIIDKLIRVIPFEGISDETLLKVCTDLNLANSFCKFQ--NGIYsALEHIAEDLNs----SM--EAEL----------- 63  Wolbachia...
WP_013066224        12 RAELLEAITPHVPFDGWSDPAFAAAVTDIGVDPTLARLVCPRGAIdLAADYHRAADr----AL--AEAL----------- 74  Rhodobact...
WP_004596292        11 KINFVQSLLELLPFNEWNNNLLEEAEEKCSFEKGYALIIFPDGLSeIIEFFEDYLDk----IM--LENL----------- 73  Rickettsi...
NP_594426           48 KALILENALEHVPQLGFTEDAIVQGGQALGYSNLSKALFPSGPMd-LISYFFLKQRy----AL--S-SL----------- 108 Schizosac...
WP_016830875        11 KISFVQSLLELLPFNEWNNKLLEEAEEKCGFAKGYSLIVFPEGLSeIVGFLEEYLDn----IM--LESL----------- 73  Rickettsi...
XP_001929751        94 TTLLTSALTSHIPTHGFTLPSLTLAARDLSLLDISPSFLGPSPVArLIHFHLYTTRt----TLpsLASQ----------- 158 Podospora...
WP_011452141         6 FVKLATKFVEVVHFMGLNYSALLFAAKETQTEDFLYRYN--ENILtFLECFEDYVT---------EKAL----------- 63  Neoricket...
XP_505941           40 TKKLLDAAMDLVPSLGFTDQALTLASRRLGYTDTTPLVLPEGPLd-LIVYHLRRERe----KL--AVASetapadppaap 112 Yarrowia ...
AAO52488           167 -----NSEQq--lLSGLSKKEKVKLALKLRLSMIKP---F---IGRWSEAMQLLANPKNIVNSSPSMLTLVDNIWYLVGD 233 Dictyoste...
FlyBase:CG30493-PB 172 -----QQKTdggkQEVEDPLDFLVQAVRQRLEMVTP---Y---KTHWPQAMALLAQPQHAPTALAQVLTLVDDICYYSGD 240 fruit fly
AAM65231           154 -----DSGLd---LQNLIPSERIFKLIRIRLEMQVP---Y---MSKWPQALSIQAHPLNVPTSFKQRAMLVDEIWHAVGD 219 thale cress
AAK25258            87 -----QAFD----VAALKIRQRIREGVVARLDAAQE---N---ADVLRPLAAFLAFPTNLALALRLTWESADAIWRWAGD 151 Caulobact...
AAS14534            64 -----RNSN----LEDMKVRERVKLAIQIHLSNYAK---LpnyREFLKNVLSFSVSPKNTYFSSKLLYRTISAIWYGIHD 131 Wolbachia...
WP_013066224        75 -----KAQE----FQGLRFRDKVAAAVRMRIGLVD--------AELVRRASSAFALPQNMALGGRLVWETADTIWLGLGD 137 Rhodobact...
WP_004596292        74 -----KTIE-----EPKKIREKISLAVKIRVKTLIP---I---IHS----KNASYFALNPIQGIKVAVRSCDAIWRYAGD 133 Rickettsi...
NP_594426          109 -----KPHL----TTIPETSGRVVQLIWSRLQGNRD---I---VQHLPQMIAICTYPSNLRKSLSSLAELSDEILYLAQD 173 Schizosac...
WP_016830875        74 -----KIIA-----EPSKIREKISLAVKTRVKTVLP---I---IHS----KNAAYFALNPIQGTEVAFRSCDAIWRYAGD 133 Rickettsi...
XP_001929751       159 -----HSDL----LSGLSVSGKIELLTWLRLKQNEP---I---IQHWQQALAVMAQPSQVPVAVRELAMLADEIYYLAGD 223 Podospora...
WP_011452141        64 -----LCSD----YTVGGVSQKIESVLWNRALVYSEfkhY---RQFIKAKFCFVLKPGNSIGSLRCSFSLSDSLWHAIGD 131 Neoricket...
XP_505941          113 ttpdfRTKD----Q--RLDDACHELIVQ-RLKGNIP---V---IEHLDNALALMVQPQNMAESLSELGALSDEIVHQAGH 179 Yarrowia ...
AAO52488           234 KSSDFDWYAKRGLLIALYTSAELFMLSDTSVDHSNTWRFVDDRVDDLIKTIKFKNDV 290 Dictyostelium discoideum
FlyBase:CG30493-PB 241 RSVDFGWYTRRVGLATIMKMTELYFLQDKSPGHAQTWEFLKSRMDEAVQLQMMLSQT 297 fruit fly
AAM65231           220 GASDLDWYVKRTILGGVYSTTEIYMLTDDSLEHRDTWAFLDDRVKDAFDLKKSIQEA 276 thale cress
AAK25258           152 TATDENHYSKRAILSGILISTLAV---DMASGRASALSHLDARIDNVMAFEKWKAGL 205 Caulobacter crescentus CB15
AAS14534           132 QSTDFNYYTKRAILAGVYLSTILFFINDYSEDFVDTLSFLDNRINNVMTFQKFKTRL 188 Wolbachia endosymbiont of Drosop...
WP_013066224       138 ESRDYNWYSKRLTLSGVFSATVLFWIGDESPDHADTWAFLDHRIENVLQFEKIKGGL 194 Rhodobacter capsulatus
WP_004596292       134 KSLDFNYYTKRGLLLSVYISSILFYIQDESEHYIETDQFIETSIKNIVKTSVQIKKI 190 Rickettsia prowazekii
NP_594426          174 KSADFQWYTKRAAISAIYSASELFMSRDTSPNFEATYNFVQHRIQHAKALNDLRNDV 230 Schizosaccharomyces pombe 972h-
WP_016830875       134 KSLDFNYYTKRSLLLSVYVSSILFYIQDESENYIETDKLIETAVENIVKTFSQMKKL 190 Rickettsia conorii
XP_001929751       224 KSVDPSWYTKRAALSGIYAAAELFMTTDKSEGFQETRRFLRRRLQEAEELGGavrsv 280 Podospora anserina S mat+
WP_011452141       132 IATGFSFYSKRATLMALNSLFMAKFADDYSDGFEKSRDFLRKRIKNIVVLARIKARL 188 Neorickettsia sennetsu
XP_505941          180 RSSDFDWYTRRASISAVYAASEVYMCQDKSKNFEDTWKFVKSSLEARRGLQegvgnv 236 Yarrowia lipolytica CLIB122
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