1FMT


Conserved Protein Domain Family
fmt

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TIGR00460: fmt 
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methionyl-tRNA formyltransferase
The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]
Statistics
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PSSM-Id: 273088
Aligned: 8 rows
Threshold Bit Score: 371.734
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1FMT_A         4 LRIIFAGTPDFA---ARHLDALLSSG-----HNVVGVFTQ-------PDRPAGRGKK--LMPSPVKVLAEE----KGLPV 62  Escherichia coli
P94463         2 TRIVFMGTPDFS---VPVLRTLIEDG-----YEVVGVVTQ-------PDRPKGRKKV--LTPPPVKEEALR----HGIPV 60  Bacillus subtil...
O67890         2 KRILFMGTPQFA---VPSLEEFAKN------FKVIGVVAQ-------PDKPAGRGKK--LTPPPTKVLAQK----LGIPI 59  Aquifex aeolicu...
O51091         1 MKIFFVSSSSIA---LEVFKEIVKH------YEVVGVLTL-------PDRPKGRGQK--LSQNVIKSEAIA----RNIKV 58  Borrelia burgdo...
P47605         2 FKIVFFGTSTLS---KKCLEQLFYDNd----FEICAVVTQ-------PDKINHRNNK--IVPSDVKSFCLE----KNITF 61  Mycoplasma geni...
P32785        30 LNVLFFGSDTFSnfsLQALNELRQNNgscgiVDNIQVVTR-------SPKWCGRQKSi-LKYPPIFDMAEKl--qLPRPI 99  Saccharomyces c...
WP_000004473   5 LRIIFAGTPDFA---ARHLDALLSSG-----HNVVGVFTQ-------PDRPAGRGKK--LMPSPVKVLAEE----KGLPV 63  Enterobacteriaceae
O77480        28 ALARLSASPGWE---DGQGARVREKPp----WRVLFFGNDqfaretlRALHAARENKeeELIEKLEVVTVPspspKGLPV 100 cattle
1FMT_A        63 FQPVSLRPQ--ENQQLVAELQA---------DVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGD 131 Escherichia coli
P94463        61 LQPEKVRLT--EEIEKVLALKP---------DLIVTAAFGQILPKELLDSPKYGCINVHASLLPELRGGAPIHYSILQGK 129 Bacillus subtil...
O67890        60 YQPEKKK----ELIPLVEELKP---------DCIVVVAYGKILPKEVLDLPPYKTINLHASLLPKYRGAAPIQRAIMAGE 126 Aquifex aeolicu...
O51091        59 LDPLILD-D--NVLNLVRDLNP---------DLMLVFSYGKIFKKEFLDLFPKGCINVHPSLLPKYRGVSPIQSAILNGD 126 Borrelia burgdo...
P47605        62 FQPKQSI----SIKADLEKLKA---------DIGICVSFGQYLHQDIIDLFPNKVINLHPSKLPLLRGGAPLHWTIINGF 128 Mycoplasma geni...
P32785       100 TCDTKQEMLalSKLTPSRQGNPendgsgapfNAIIAVSFGKLIPGDLIRAVPL-ALNVHPSLLPRHKGSAPIQRALLEGD 178 Saccharomyces c...
WP_000004473  64 FQPVSLRPQ--ENQQLVAELQA---------DVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGD 132 Enterobacteriaceae
O77480       101 KQYAVQSQLpvYEWPDVGSGEY---------DVGVVASFGRLLSEAFILKFPYGILNVHPSCLPRWRGPAPIIHTILHGD 171 cattle
1FMT_A       132 AETGVTIMQMDVG-LDTGDMLYK-LSCPITAED------------T-------SGTLYDKLAELGPQGLITTLKQ-LADG 189 Escherichia coli
P94463       130 KKTGITIMYMVEK-LDAGDMISK-VEVDIEETD------------N-------VGTLHDKLSVAGAKLLSETVPN-VIAG 187 Bacillus subtil...
O67890       127 KETGNTVMLVNEE-MDAGDILAQ-EKIPIEEED------------N-------FLTLSEKLAKSGAKLLVNTLRL-WFEG 184 Aquifex aeolicu...
O51091       127 CVSGVTIQSMALE-MDSGNILVQ-KNFKIRSYD------------T-------SHDISKLVSSLSPSLVLEALEK-ISKG 184 Borrelia burgdo...
P47605       129 KKSALSVIQLVKK-MDAGPIWKQ-QDFLVNNDW------------N-------TGDLSIYVEEHSPSFLIECTKE-ILNK 186 Mycoplasma geni...
P32785       179 TYTGVTIQTLHPDrFDHGAIVAQtEPLAIATMLskgrvndstadfNseglprrTAILMDQLGALGAQLLGQTLRErLYLP 258 Saccharomyces c...
WP_000004473 133 AETGVTIMQMDVG-LDTGDMLYK-LSCPITAED------------T-------SGTLYDKLAELGPQGLITTLKQ-LADG 190 Enterobacteriaceae
O77480       172 TIAGVTIMQIKPRrFDVGPILKQ-ETVPVPPKS------------T-------SKELEAVLSRLGANMLISVLKN-LPES 230 cattle
1FMT_A       190 TAKPEVQDETLVTYAEKLSKEEARIDWS-LSAAQLERCIRAFN---PWPMSWLEIEG---------QPVKVWKASVIDTA 256 Escherichia coli
P94463       188 SISPEKQDEEKATYAPNIKREQELLDWS-RTGEELYNQIRGLN---PWPVAYTTLNG---------QNLKIWASKKIAAP 254 Bacillus subtil...
O67890       185 KVKPVPQNHEEATYAPPVQKEEYRICWK-ASAESVRDRIRGL-----YPNAYTTFRG---------NRIKILKARVVDLE 249 Aquifex aeolicu...
O51091       185 FLG-IPQKSSEATFCSFLKKESGFIDFN-LSAFEIKNKINACN---PWPLVRVRLDY---------NDIIFHRADFLEVD 250 Borrelia burgdo...
P47605       187 KGK-WFEQIGEPTFGLNIRKEQEHLDLN-QIYKSFLNWVKGLA---PKPGGWLSFEG---------KNIKIFKAKYVSKS 252 Mycoplasma geni...
P32785       259 QNRVQAPTAYKPSYAHRITTEDKRIHWArDSAAELLNKLETLG---PLHAFKEATAArkdaqnsvlKRILFHECKVMRDA 335 Saccharomyces c...
WP_000004473 191 TAKPEVQDETLVTYAEKLSKEEARIDWS-LSAAQLERCIRAFN---PWPMSWLEIEG---------QPVKVWKASVIDTA 257 Enterobacteriaceae
O77480       231 LNNGRQQPAEGVTHAPKISAATSCIKWEeQTSEQIFRLYRAVGniiPLQTLWMDNTI---------KLLDLVEVDNSILS 301 cattle
1FMT_A       257 TN----A--APGTILEANKQ-GIQVATG-DGILNLLSLqpAGKKAMSAQDLLN-SRREWFVPGNRL 313 Escherichia coli
P94463       255 TT----A--EPGTVVAVEKE-GIIVATGnETALLLTELqpAGKKRMKGEDFVRgAHVEAGDVLGVN 313 Bacillus subtilis subsp. subt...
O67890       250 G--------YPGEIQDTKR---LIVACGeKSLEILELIspKGKK-MRGEDFMRgYRPQLYEPFNSE 303 Aquifex aeolicus VF5
O51091       251 LY----KerKIGEIVDFNPEkGLFVNTG-KGILLLLEVqrPGRKVLDFKSFYNgSRQLIGQVFSSI 311 Borrelia burgdorferi B31
P47605       253 NY----Kh-QLGEIVNISRK-GINIALKsNEIISIEKIqiPGKRVMEVSEIINg-KHPFVVGKCFK 311 Mycoplasma genitalium G37
P32785       336 RLd---NgsKPGMFKYDDIKdCILVTCRgNLLLCVSRLqfEGFAVERAGQFM---ARLRKRCGAls 395 Saccharomyces cerevisiae S288c
WP_000004473 258 TN----A--APGTILEANKQ-GIQVATG-DGILNLLSLqpAGKKAMSAQDLLNs-RREWFVPGNRL 314 Enterobacteriaceae
O77480       302 DSkltgQavIPGSVIYHKQS-QILLVCCkDDWIGVRSV--MLKKTLTATDFYNgYLHPWYQKNSQA 364 cattle
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