Conserved Protein Domain Family
NHL_TRIM2_like

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cd14960: NHL_TRIM2_like 
NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
The E3 ubiquitin-protein ligase TRIM2 is responsible for ubiquinating the apoptosis-inducing Bcl-2-interacting mediator of cell death (Bim), when the latter is phosphorylated by p42/p44 MAPK. TRIM2 regulates the ubiquitination of neurofilament light subunit (NF-L), deficiencies in TRIM2 result in increased NF-L levels in axons and subsequent axonopathy. TRIM2 is also involved in regulating axon outgrowth during development; it contains RING and BBOX domains, the NHL repeat domain is located at its C-terminus. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Statistics
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PSSM-Id: 271330
Aligned: 20 rows
Threshold Bit Score: 336.239
Created: 21-Mar-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:NHL repeat [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #######  ############  #########     ##########              
D3ZQG6        471 DLIFRVGTKGRNKGEFTN-LQGVAASt-SGKILIADSNNQ--CVQIFSNDGq----FKSRFGIRGRSPGql--qRPTGVA 540  Norway rat
XP_002735026  455 DLLLRIGMKGRNKAEFMN-PQCVACSa-TGRLIVTDSGNN--SVQVFVNNCd----FKMKFGIRGRNPGql--qRPTGCA 524  Saccoglossus ...
ELU03406      466 DLVLSVGMKGRAKGEFTN-PQGVCCY--KDRVLVADSNNQ--CVQVFTCGGd----FKLRFGTRGRQVGql--qRPTGVA 534  Capitella teleta
ESO07943      482 GPCQRIGSKGHNKGEFMN-LQGIAVH--DERIAVADSNGQ--CVQIFSLEGd----CLLKFGVKGRSPGqm--qRPTSVT 550  Helobdella ro...
XP_006004926  424 STDISPTTDGVKRRVKSP-GSGHVKQkaVKRPPSMHSSGK--RKENPIEDD-----LIFKVGTKGRNKGef--tNLQGVA 493  coelacanth
CDJ23508      364 GMIFAIGARGRGVSEFAC-PQGAMFTr-DNKLVIVDSNNA--NVQVFTSSGa----FLRRFGEFGSEAGqm--vRPTSVA 433  Echinococcus ...
XP_006806688  372 QKKKGSKRASSALGTPRP-SQVVLPK--PKRLLILFPSNEt-CIQVSPSTTtatnsAANATPSTGSSEGakrrgKSPGQK 447  Neolamprologu...
CDJ09618      359 GTIFAIGARGRGVSEFAS-PQGAMFTr-DSKLVIVDSNNS--NAQVFSSQGa----FLLRFGAFGSEPGqm--vRPTSCA 428  Hymenolepis m...
ETE71005      378 DGEILDNKNGTYEFLYTLqKEGDFIL--SLRLYDQHIKGSpfKLKVIRSADv----SPTTEGVKRRVKS-----PGSGHV 446  king cobra
ESO00601        1 MNFKRFGNKGNQLGEFMN-VQGVCHK--NGQVYITDSKNQ--CIQVLDVLLg---kFVNKFNLSSLPLKl----QPFLIG 68   Helobdella ro...
Feature 1                                                                                         
D3ZQG6        541 VH--PSGDIIIADydNKWVSIFSNDGKf-kTKIGSGKLm-----gPKGVSVDRNGHIIVVDNKACCVFIFQPNG-KIVTR 611  Norway rat
XP_002735026  525 IM--ANGNYLIADydNKMVSMFTPDGKf-aSKIGTGRLq-----gPKGVSVDRNGNIIIVDNKNSQILIFNPNG-KLLNR 595  Saccoglossus ...
ELU03406      535 VT--LNGNYLVADydNKWVSVFNPDGKy-lNKIGTGKLl-----gPKGICVDHNGHIIVVDNKASSVFVFQSNG-KLLHK 605  Capitella teleta
ESO07943      551 FTp-DGQNILVSDyeNKWIGIYTIEGKf-lSRLGHGKLv-----gPKGVAIDAQGRVVVVDNKSSTVFLYTLSG-KILGK 622  Helobdella ro...
XP_006004926  494 AS--SNGKILIADsnNQCVQIFTNEGQv-kSRFGVRGRspgqlqrPTGVAVHPNGDIIVADYDNKWVSIFSPDG-KFKYK 569  coelacanth
CDJ23508      434 ET--INSNYLISDfdLHCIHVFQPSGSy-mSRFGQRNLa-----gPYDVAVDSRGKIFVVDLKACTVCYFKPTG-RFLGH 504  Echinococcus ...
XP_006806688  448 KKgsKRASSALGTprRKTQNPIEDDLIfriGTKGRNKGef---tnLQGVAASSNGRILIADSNNQCVQIFSNEG-EFKSR 523  Neolamprologu...
CDJ09618      429 ET--INSNYLICDfdLHCIHVFQPSGSy-iSRFGQRNLs-----gPIDVAVDSKGKIFVVDMKACTICYFKPTG-RFLGH 499  Hymenolepis m...
ETE71005      447 KQkaVKRPASMYStgKRKENPIEDDLI---FRVGKLMG-------PKGVSVDRNGHIIVVDNKACCVFIFQPNG-KIVTR 515  king cobra
ESO00601       69 IStdLSGKIYVTDyeNHCVLLFDADGSy-lKKIGYNNLl-----gPKGLMIDSQRNLLVIDNRGCCVQTFTAALgELTFR 142  Helobdella ro...
Feature 1                                                                                         
D3ZQG6        612 FGSRgng----------------drqFAGPHFAAVNS-SNEIIITDFHNHSVKVFNQEGeFMLKFGSNGegngqFNAPTG 674  Norway rat
XP_002735026  596 FGSRgmd----------------esqLCGPHFTAINS-NNEIIVSDFHNHCIKVFDAEGqFIMKFGSNGegngqFNAPTG 658  Saccoglossus ...
ELU03406      606 FGARgne----------------phqFAGPHFCAINS-RNDIIVSDFHNHCVKVYDCEGtFITSFGANGegngqFNAPTG 668  Capitella teleta
ESO07943      623 FGLRaidhessgqpvvrntyaeaqarMAGPHFCAIDPiDGDVVVTDFHNHKVKVFTSEGqYKFTFGSAGdgngqFSAPTG 702  Helobdella ro...
XP_006004926  570 SRYV----------------------YVRPHFAAVNN-NNEIIITDFHNHSVKVFNQDGeFLLKFGSNGegngqFNAPTG 626  coelacanth
CDJ23508      505 FGARgaa----------------dnqFTGPTGIAIDS-TDQVYVVDSPVHSIKVFDNDGeFLFKFGVNGyepgcLHLPSR 567  Echinococcus ...
XP_006806688  524 FGVRgrspg-------------qlqrPTGPHFAAVNK-NNEIIVTDFHNHSVKVFTLEGeLVLKFGSNGegngqFNAPTG 589  Neolamprologu...
CDJ09618      500 FGSRgaa----------------dnqFTAPTGITVDS-ADRIYVVDSQAHSIKVFDKDGeYLFKFGVNGnepgcLHLPTR 562  Hymenolepis m...
ETE71005      516 FGSRgng----------------dkqFAGPHFAAVNH-NNEIIITDFHNHSVKVFNQEGeFLLKFGSNGegngqFNAPTG 578  king cobra
ESO00601      143 FGIQgyr----------------deeLCRPHFCALSNdENHVIITDFRSDKVKIFTREGkFVKCFGANG-----LRGPTG 201  Helobdella ro...
Feature 1                                                                                 
D3ZQG6        675 VAVDSNg-nIIVADWgnsRIQVFDgsgSFLSYINTSADPLYGPQGLALTS-DGHVVVADSGNHCFKVYRYLQ 744  Norway rat
XP_002735026  659 VAVDSLd-nIIVADWgnsRIQVFDsngSFLSYINTNADPLYGPQGLAITS-DGNIAVADSGNYCVKIYKYLQ 728  Saccoglossus kowalevskii
ELU03406      669 VAVDKNd-nILVADWgnsRIQVFDssgSFLSYIHTAGGPLYGPQGLDISP-EGQVIVADSGNHCLKMYKYLQ 738  Capitella teleta
ESO07943      703 VCIDSQg-nILVADWgnsRVQIFDkngSFLCFIDTSSDPLYGPQGIAMTK-DNDIIVADSGNHCLKIYKQLL 772  Helobdella robusta
XP_006004926  627 VAVDSNg-nIIVADWgnsRIQVFDgsgSFLSYINTSADPLYGPQGLALTS-DGHVVVADSGNHCFKVYRYLQ 696  coelacanth
CDJ23508      568 LVFYPHd-lLLISDTgnnRVQVFDkegQYLWMFTSSLDALNDPRDIAILPnDGLIAIVDTGNYCIKAFNLQN 638  Echinococcus granulosus
XP_006806688  590 VAVDINg-nIIVADWgnsRIQVFDgsgSFLSYINTSADPLYGPQGLALTS-DGHVVVADSGNHCFKVYRYLQ 659  Neolamprologus brichardi
CDJ09618      563 VAFDGTn-lLFVSDTgnnRIQVFDiqgQYLWMLTSSLDALNEPKGLAVLPrEELIAVVDTGNYRIKAFNLLH 633  Hymenolepis microstoma
ETE71005      579 VAVDSNg-nIIVADWgnsRIQSKKrglSVEEKRTRMMEIFFETKDVFQLKdIEKIASKEKGITSMSVKDILQ 649  king cobra
ESO00601      202 LAVHKKsgdIVVCDFgnsKIQVYKsngSYMHTVDTSVSQLSGPQGVCFID-DDRILVADSGNHCLKVFNYKS 272  Helobdella robusta

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