3QA8,3RZF


Conserved Protein Domain Family
STKc_IKK_beta

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cd14038: STKc_IKK_beta 
Click on image for an interactive view with Cn3D
Catalytic domain of the Serine/Threonine kinase, Inhibitor of Nuclear Factor-KappaB Kinase (IKK) beta
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. IKKbeta is involved in the classical pathway of regulating Nuclear Factor-KappaB (NF-kB) proteins, a family of transcription factors which are critical in many cellular functions including inflammatory responses, immune development, cell survival, and cell proliferation, among others. The classical pathway regulates the majority of genes activated by NF-kB including those encoding cytokines, chemokines, leukocyte adhesion molecules, and anti-apoptotic factors. It involves NEMO (NF-kB Essential MOdulator)- and IKKbeta-dependent phosphorylation and degradation of the Inhibitor of NF-kB (IkB), which liberates NF-kB dimers (typified by the p50-p65 heterodimer) from an inactive IkB/dimeric NF-kB complex, enabling them to migrate to the nucleus where they regulate gene transcription. The IKKbeta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270940
Aligned: 6 rows
Threshold Bit Score: 596.944
Created: 19-Dec-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #####   #            # #                             #                     ####
3QA8_A        21 RLGTGGFGYVLRWIHQdtgEQVAIKQCRQELSpKNRERWCLEIQIMKKLnHPNVVSAREVPDGLQKLAPNDLPLLAMEYC 100 African clawed ...
3RZF_A        22 RLGTGGFGYVLRWIHQdtgEQVAIKQCRQELSpKNRERWCLEIQIMKKLnHPNVVSAREVPDGLQKLAPNDLPLLAMEYC 101 African clawed ...
NP_001116737  20 RLGTGGFGNVTLWQNKetsIQIAIKQCRQELSvKNKGRWSLEIQIMKRLtHMNVVAARDVPEELQKLATNDLPLLAMEFC 99  zebrafish
XP_002198414  20 RLGTGGFGNVIRWHNKetgEQVAIKQCRQELSpRNRDRWALEIQIMKRLnHPNVVAARDVPEGMQKLAPNDLPLLAMEYC 99  zebra finch
NP_001085125   4 RLGTGGFGYVLRWIHQdtgEQVAIKQCRQELSpKNRERWCLEIQIMKKLnHPNVVSAREVPDGLQKLAPNDLPLLAMEYC 83  African clawed ...
O14920        20 RLGTGGFGNVIRWHNQetgEQIAIKQCRQELSpRNRERWCLEIQIMRRLtHPNVVAARDVPEGMQNLAPNDLPLLAMEYC 99  human
Feature 1           #                                         # # ## #             #             
3QA8_A       101 EGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHeNRIIHRDLKPENIVLQPGpQRLIHKIIDLGYAKELDQGELC 180 African clawed ...
3RZF_A       102 EGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHeNRIIHRDLKPENIVLQPGpQRLIHKIIDLGYAKELDQGELC 181 African clawed ...
NP_001116737 100 QGGDLRKYLNLVENCCGMREAAVLTLIQDISSALTYLHgMRIIHRDLKPENIVLQQGeKRLVHKIIDLGYAKELDQSSLC 179 zebrafish
XP_002198414 100 QGGDLRKYLNQLENCCGLREEAILILLSDIASALRYLHeNRIIHRDLKPENIVLQQGeQRLIHKIIDLGYAKELDQGSLC 179 zebra finch
NP_001085125  84 EGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHeNRIIHRDLKPENIVLQPGpQRLIHKIIDLGYAKELDQGSLC 163 African clawed ...
O14920       100 QGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLHeNRIIHRDLKPENIVLQQGeQRLIHKIIDLGYAKELDQGSLC 179 human
Feature 1                                                                                        
3QA8_A       181 TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECiTGFRPFLPNWQPVQWHGKVREKsneHIVVYDDLTGAVKFSSVL 260 African clawed ...
3RZF_A       182 TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECiTGFRPFLPNWQPVQWHGKVREKsneHIVVYDDLTGAVKFSSVL 261 African clawed ...
NP_001116737 180 TSFVGTLQYLAPELLEQQKYTVAVDYWSFGTLVFECiTGFRPFLPTWQPVQWHSKLQQKhvdDIVVYEDLGGEVRYSKHL 259 zebrafish
XP_002198414 180 TSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECiTGFRPFLPNWQPVQWHTKVRQKselDIVVSEDLSGEVKFSSCL 259 zebra finch
NP_001085125 164 TSFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECiTGFRPFLPNWQPVQWHGKVREKsneHIVVYDDLTGAVKFSSVL 243 African clawed ...
O14920       180 TSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECiTGFRPFLPNWQPVQWHSKVRQKsevDIVVSEDLNGTVKFSSSL 259 human
Feature 1                                                                                        
3QA8_A       261 PTPNHLsgiLAGKLERWLQCMLMWhQRQRGTD------------------------------PQNPNvGCFQALDSILSL 310 African clawed ...
3RZF_A       262 PTPNHLsgiLAGKLERWLQCMLMWhQRQRGTD------------------------------PQNPNvGCFQALDSILSL 311 African clawed ...
NP_001116737 260 PNPHNLnklLAGELERWLQMMLRWsPKERGKDlkqrnkesqetpkdaeeesketspegakdaPKAPC-FCFDELSHILNL 338 zebrafish
XP_002198414 260 PCPNNLnsvLSGRLEKWLQLMLMWhPRQRGTDp-----------------------------TYGPN-GCFKALDDILNL 309 zebra finch
NP_001085125 244 PTPNHLsgiLAGKLERWLQCMLMWhQRQRGTD------------------------------PQNPNvGCFQALDSILSL 293 African clawed ...
O14920       260 PYPNNLnsvLAERLEKWLQLMLMWhPRQRGTDp-----------------------------TYGPN-GCFKALDDILNL 309 human

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