4FQN,2KBR


Conserved Protein Domain Family
harmonin_N_like

?
cd07347: harmonin_N_like 
Click on image for an interactive view with Cn3D
N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This domain is also found in CCM2 (also called malcavernin; C7orf22/chromosome 7 open reading frame 22; OSM). CCM2 along with CCM1 and CCM3 constitutes a set of proteins which when mutated are responsible for cerebral cavernous malformations, an autosomal dominant neurovascular disease characterized by cerebral hemorrhages and vascular malformations in the central nervous system. CCM2 plays many functional roles. CCM2 functions as a scaffold involved in small GTPase Rac-dependent p38 mitogen-activated protein kinase (MAPK) activation when the cell is under hyperosmotic stress. It associates with CCM1 in the signaling cascades that regulate vascular integrity and participates in HEG1 (the transmembrane receptor heart of glass 1) mediated endothelial cell junctions. CCM proteins also inhibit the activation of small GTPase RhoA and its downstream effector Rho kinase (ROCK) to limit vascular permeability. CCM2 mediates TrkA-dependent cell death via its N-terminal PTB domain in pediatric neuroblastic tumours; the C-terminal domain of malcavernin represented here has also been refered to as the Karet domain. Harmonin contains a single copy of this domain at its N-terminus which binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain (a component of the Usher protein network). Whirlin contains two copies of this domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Statistics
?
PSSM-Id: 259818
Aligned: 14 rows
Threshold Bit Score: 66.4564
Created: 5-Apr-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:putative protein binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of the N-terminal domain of harmonin to an internal peptide of cadherin, and on the human CCM2 HHD dimerization interface
  • Structure:2KBR_A; human harmonin, N-terminal domain binds an internal peptide of cadherin23; contacts at 4 A.
    View structure with Cn3D
  • Structure:4FQN: the harmonin homology domain of human CCM2 forms homodimer, contacts at 4 A
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #   #              #  #  ##  #                                              
4FQN_A         14 ATELLQDYMLTLRTKL--SSQEIQQFAALLHEYRNGASIHEFCINLRQLYG-DSRKFLLLGLRPFIP--EKDSQHFENFL 88   human
2KBR_A          2 DRKVAREFRHKVDFLIe-NDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINePSRLPLFDAIRPLIP--LKHQVEYDQLT 78   human
NP_001152793  378 IRVQGRTFSQQLDHLL--TPPERYGVCRALERFFQHRNIDTLIVDVYPVLDtPAKQVLWQFLYQLLT--YEEQELCQEKI 453  house mouse
NP_001152793  122 RRRKAQEFSCQVDDILgdRLTAKEQVFTALKQFAAEQRVDELVWTLTLVLPsEAQGPVLDNLRIFIP--KKHRARFDEVV 199  house mouse
XP_001636307   11 ISESVRHLHNTLTKIL--SDQERAYFIQSLNRYQRNRDVDSLVASLKTVLNsPKKRQVFPILREIIP--SRDRHYFDKTW 86   starlet sea a...
EGD78251        8 RSQHVAEFQEMAQHYL--NDHEKVQLQHALTEFKHSKSVPRLVATLNIVLDtPQKRDLLRPLRFLIPddFALRSAFDKMA 85   Salpingoeca s...
EGD79728        4 KQEKFALFRAQTQQYL--DQHDAVRVKGVLSTFLKDKALESMVDGLLQILDtDEKRRMLPTIQSLIP--SKYHDDFDQLV 79   Salpingoeca s...
EGD78108        4 QAEAIDYYKRLCKALL--SKGERSALQKVLATFVSSKSFATLANDLPKILDsPRKRSLIPAIKALIP--DQYHAQFDRAL 79   Salpingoeca s...
XP_001640435  452 VKILAREFKIHMNRLF--TSGEQKYIKQCLMDYRRDRDVEKLLGSIEPVLDdPDKLHILHYMSSLLP--EIEQLAFDREA 527  starlet sea a...
NP_001182192  554 WESRRPLIQDLAQRLL--TDDEVLAVTRHCSRYVHEGGIEDLVRPLLAILDrPEKLLLLQDIRSVVA--PTDLGRFDSMV 629  human
Feature 1           
4FQN_A         89 ET 90   human
2KBR_A         79 PR 80   human
NP_001152793  454 AC 455  house mouse
NP_001152793  200 SQ 201  house mouse
XP_001636307   87 QG 88   starlet sea anemone
EGD78251       86 PY 87   Salpingoeca sp. ATCC50818
EGD79728       80 AT 81   Salpingoeca sp. ATCC50818
EGD78108       80 QH 81   Salpingoeca sp. ATCC50818
XP_001640435  528 AR 529  starlet sea anemone
NP_001182192  630 ML 631  human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap