Conserved Protein Domain Family
RRM_RBM43

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cd12546: RRM_RBM43 (this model, PSSM-Id:240990 is obsolete and has been replaced by 409962)
RNA recognition motif in vertebrate RNA-binding protein 43 (RBM43)
This subgroup corresponds to the RRM of RBM43, a putative RNA-binding protein containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although its biological function remains unclear, RBM43 shows high sequence homology to poly [ADP-ribose] polymerase 10 (PARP-10), which is a novel oncoprotein c-Myc-interacting protein with poly(ADP-ribose) polymerase activity.
Statistics
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PSSM-Id: 240990
Aligned: 13 rows
Threshold Bit Score: 95.4716
Created: 6-Jul-2012
Updated: 1-Feb-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6ZSC3         15 RTVVVAGLPvdlfsdqllAVLVKSHFQDi-kNEGGDVEDVIYPtr-----tkGVAYVIFKEkkVAENVIRqkkHWLARKT 88   human
XP_002742352    4 RCIVASNIPrn-----atAARLRAYFQEk-qNGGGDVTNIVYPlef---edsDTAVVTFSDenKVDSVVKi-tHVFHGCI 73   Saccoglossus ...
XP_002742351    5 KSIIVTGIPsg-----asRDQLQIYFQRs-sNGGGDVTSVVYPlnpqsesmkDVAMVTFDKeeDCQRVLSk-vQTLNSTL 77   Saccoglossus ...
XP_003440961   10 RTVVVSGVPnvlp-pgriTDKLTIHFQStrkSDGGDVEKVKYPtn-----mdGVAFVTFVKakDAARVVEk-kQHIMTDS 82   Nile tilapia
XP_002608357  164 RSILVSNIPdg-----inKDKLEIHFMRk-sNGGGDIENITLRd-------sSTAKITYMDesSIQGVLDk-eQFIRDKK 229  Florida lancelet
XP_002127337    2 SAIRVQKLPds-----anPDKIEIHFQKr-kNNGGDVAYVLFPinq---sevDTALVEFEEddVADDVVSk-kQVFQDVV 71   Ciona intesti...
XP_422159     110 RTVVISGVPdgvlnndvmSDILVIHFQKa-kNNGGDVEEVKYPtt-----ekGVAYITFEDqeVVGSVLQkneHRLEDRR 183  chicken
XP_002609022    9 RCVVVHGLPadvp-agtlKDKLNIHFQSrrkSGGGDVRKVELTdg------gQVAYVWFEAreTAQNVLQrqeQVFEITV 81   Florida lancelet
XP_001372538   36 RTIIVSNIPvgnfndevmAGMLKNYFQEa--NKFGDVENVTYPtr-----ikGGAFVTFQEikDVENILKkkkHSLIKEG 108  gray short-ta...
XP_696033     110 HKVVVSGLPvgvs-pskmKNKLTIYFQRr-hNAGGEVLDIRYPaa-----qpDQAWVLFRNrrDAEHVLKqpdRKIGINE 182  zebrafish
CAF90030        6 GTVRVSGLPadie-egrlKDKLFIHFLRt-rNGGGEIETITIAka-----tpVSALITFEEceVARSVIErspHVLEVSG 78   spotted green...
AAH96897        4 MVIEVNRLPdsyr-edamIDKLTIHFLRr-cNKGEDVLTVIYPts-----nkGQAYVVFESe-EVPGVLEh-tHVLQVES 74   zebrafish
XP_002661190    6 RAVSVYGLPadvd-herlRDKLLIHFLRq-sNGGGEVKSVSLIgr-----tpLRALVTFEEsrGNPQYDCd--CRLQSAS 76   zebrafish
Q6ZSC3         89 RHAEL 93   human
XP_002742352   74 LSVRP 78   Saccoglossus kowalevskii
XP_002742351   78 LEVKP 82   Saccoglossus kowalevskii
XP_003440961   83 QFPED 87   Nile tilapia
XP_002608357  230 VEVQR 234  Florida lancelet
XP_002127337   72 LVVKK 76   Ciona intestinalis
XP_422159     184 LPRYY 188  chicken
XP_002609022   82 NGEKR 86   Florida lancelet
XP_001372538  109 LLPTC 113  gray short-tailed opossum
XP_696033     183 QHFSI 187  zebrafish
CAF90030       79 KKYKL 83   spotted green pufferfish
AAH96897       75 QFYPL 79   zebrafish
XP_002661190   77 SGCRH 81   zebrafish
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