2DGS


Conserved Protein Domain Family
RRM2_DAZAP1

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cd12327: RRM2_DAZAP1 (this model, PSSM-Id:240773 is obsolete and has been replaced by 409765)
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RNA recognition motif 2 in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins
This subfamily corresponds to the RRM2 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated is predominantly nuclear and the nonacetylated form is in cytoplasm. DAZAP1 also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain.
Statistics
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PSSM-Id: 240773
Aligned: 13 rows
Threshold Bit Score: 145.201
Created: 13-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DGS_A         9 KSNKIFVGGIPHNcgETELREYFKKFGvvTEVVMIYdaekqrprGFGFITFEdEQSVDQAVNmhf-hdIMGKKVEVKRAE 87   human
Q98SJ2       112 RSNKIFVGGIPHNcgETELKEYFNRFGvvTEVVMIYdaekqrprGFGFITFEdEQSVDQAVNmhf-hdIMGKKVEVKRAE 190  African clawed...
NP_001026599 112 KSNKIFVGGIPHNcgETELREYFKKFGvvTEVVMIYdaekqrprGFGFITFEdEQSVDQAVNmhf-hdIMGKKVEVKRAE 190  chicken
AAI14332     111 KSKKIFVGGIPHNcgEAELRDYFNRFGvvTEVVMIYdaekqrprGFGFITFEaEQSVDQAVNmhf-hdIMGKKVEVKKAE 189  zebrafish
EFJ10700     102 KTKKIFVGGLGSNvtEDDFRKYFEQFGtiTDVVVMYdhatqrprGFGFITFDtEEAVDNVLHktf-heLKEKMVEVKRAV 180  Selaginella mo...
ACN39853     104 RTKKIFVGGLAPTvtENDFRKYFEQFGtiTDVVVMYdhstqrprGFGFITYDsEDAVDQVLQktf-hdLNGKMVEVKRAV 182  Sitka spruce
EFN58816     100 RTKKVFVGGLAATvdEDTFRAYFEEFGlvDDAVVMFdhenkrprGFGFITFAdEESVDAVFArgtiqtIHDKQIEIKRAV 179  Chlorella vari...
NP_974899     44 NSKKIFVGGLASSvtEAEFKKYFAQFGmiTDVVVMYdhrtqrprGFGFISYDsEEAVDKVLQktf-heLNGKMVEVKLAV 122  thale cress
NP_476869     94 GGYKVFLGGLPSNvtETDLRTFFNRYGkvTEVVIMYdqekkksrGFGFLSFEeESSVEHVTNery-inLNGKQVEIKKAE 172  fruit fly
XP_002956921  99 RTKKIFVGGLAPSvdEAQLRQHFSQFGtvEDAVVMYdhenkrprGFGFVTFAeEDAVDRVFShgavqtIADKPIEVKAAV 178  Volvox carteri...
EFX80909     113 NGYKVFLGGLPSNltETDLRNFFSQYGkvSEVVIMYdqekkksrGFGFLTFEsEESVDRCTGehy-vsINGKQVEIKKAE 191  common water flea
ADV40069     104 QYPKVFLGGLPPNctETDLRSFFSRYGtvVEVVLMYdqekkksrGFGFLSFEtEDSVKQVCAehf-vkINGKKIECKHAE 182  Latrodectus he...
XP_002736841 101 RVKKVFIGGIPPNcnEDDINNFFSQFGqvTEFIMMYdqqqkrprGFGFLSFEsEDIVEKVCTiry-htINGKTVECKKAE 179  Saccoglossus k...
2DGS_A        88 P 88   human
Q98SJ2       191 P 191  African clawed frog
NP_001026599 191 P 191  chicken
AAI14332     190 P 190  zebrafish
EFJ10700     181 P 181  Selaginella moellendorffii
ACN39853     183 P 183  Sitka spruce
EFN58816     180 P 180  Chlorella variabilis
NP_974899    123 P 123  thale cress
NP_476869    173 P 173  fruit fly
XP_002956921 179 P 179  Volvox carteri f. nagariensis
EFX80909     192 P 192  common water flea
ADV40069     183 P 183  Latrodectus hesperus
XP_002736841 180 P 180  Saccoglossus kowalevskii
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