2E70


Conserved Protein Domain Family
KOW_Spt5_5

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cd06085: KOW_Spt5_5 
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KOW domain of Spt5, repeat 5
Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.
Statistics
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PSSM-Id: 240509
Aligned: 61 rows
Threshold Bit Score: 66.3541
Created: 7-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2E70_A         15 RDNELIGQTVRISQGPYKGYIGVVKDATES-TARVELHSt-cQTISVDRq-RLTT 66   human
XP_001761702  574 REDSIVGRSVKIRLGPFKGYRGRVKDATDS-TVRIELESq-mKVVTGMFsnRYLR 626  Physcomitrella patens subsp. patens
CAL53615      602 GRDPLIGQTKKIRSGVYKGYVGRIIDVTDS-TVRMELQAq-aRTITVNRe-HLDV 653  Ostreococcus tauri
XP_001690057  775 AHSQYVGKVVRVTKGPYNGYRGRVKQQTAT-HVQLELDAvagRPVTVPMe-YVQL 827  Chlamydomonas reinhardtii
5731756       698 GDDSLLGTTVKIRLGPFKGYRGPVVEVKGN-SVRVELEM---KIVTGKPlnSLLR 748  thale cress
EEC80208      791 GHDALVGKCIKIKSGPYKGYRGRVKEVTGV-LVRVELDSl-mKIVTVKRd-DIAD 842  Indian rice
EFN50704      672 QDKMLEGRSITIKKGPFRGMRGRVISATAT-HVRLELEAq-mKTVTVDRs-HLAL 723  Chlorella variabilis
XP_003062151  835 RDNSLVGTTIKVSAGVYKGYKGKVVDATET-TVRVELQAq-aRTVTVQRn-QIVM 886  Micromonas pusilla CCMP1545
XP_002993560  604 RNDNYVGRSVKIRTGPYKGYRGRVVDASGGrSVRIELESq-mKIVTVDR--DILS 655  Selaginella moellendorffii
EIE20992      758 PDDQMIGKVTTIAKGPFRGYRGRITKVTPT-EVRVELEAq-qRVVGVSRd-AIPP 809  Coccomyxa sp. C-169
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