Conserved Protein Domain Family
RhoGAP_myosin_IXB

?
cd04407: RhoGAP_myosin_IXB 
RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Statistics
?
PSSM-Id: 239872
Aligned: 3 rows
Threshold Bit Score: 398.211
Created: 10-May-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:catalytic residue [active site]
Evidence:
  • Comment:arginine from RhoGAP stabilizes active site glutamine from Rho GTPase
  • Citation:PMID 9631293

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                           #                                          
XP_418252  915 FGVSVSSLTsernsVPIVMEKLLEHVEMHGLYTEGIYRKSGSANRMKELKQLLqadpnSVKLENYPIHTITGILKQWLRE 994  chicken
Q13459    1698 FGVCVDSLTsdkasVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQALqtdpaAVKLENFPIHAITGVLKQWLRE 1777 human
XP_696731  289 FGVRVGNLVnnktpVPIVLEIMLEHVEMNGLYTEGIYRKSGSANRMKELHQLLeagpeNVCLEDYPIHAVTGLVKQWLRE 368  zebrafish
Feature 1                                                                                      
XP_418252  995 LPDPLMTSAQYNDFLRAVELPEKQEQLCAIYSVLEqLPQANHDTLERLIFHLVKVALIEDVNRMSPNALAIVFAPCLLRC 1074 chicken
Q13459    1778 LPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAVLEhLPEANHNSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLRC 1857 human
XP_696731  369 LPEPLMTFTHYNDFLYAIELPEKQEQLQAIYRVLEqLPTANFNTLERLIFHLVRVAKEEKSNRMTPNSLAIVFAPCILRC 448  zebrafish
Feature 1                                
XP_418252 1075 PDTSDPLTSMKDVSKTTMCVEMLIKE 1100 chicken
Q13459    1858 PDNSDPLTSMKDVLKITTCVEMLIKE 1883 human
XP_696731  449 PDSADPLMSMKDVAKTTTCVEMLLIE 474  zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap