Conserved Protein Domain Family
LysM

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COG1388: LysM (this model, PSSM-Id:224306 is obsolete and has been replaced by 440998)
LysM repeat [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 224306
Aligned: 43 rows
Threshold Bit Score: 37.2041
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15805935 176 IGVKVGLRVEQLRRINGLT-----GDALQIGQVLRLTAPpap-----tvvAKAPVRPAQPPTTYTVRRGDTLTsigkfvg 245 Deinococcus radiodu...
16078849   2 IMSKESIIFVGLFTV-ILSavilmLSYTSSGQELNQY-------------VKIEVQQGDTLWSIADQVA----------- 56  Bacillus subtilis
16079836  15 iAEKYGVDVEEVKKLn--------TQLSNPDLIMPGMK------------IKVPSEGVPVRKEPKAGKSPAAGsvkqehp 74  Bacillus subtilis
15896156 212 IEANANALVEILYKAKDSGqinyiSDDVEISGEESIDGSdptmdndsifrVDAYEFNVKQDDLGENRIISTEAivkcdak 291 Clostridium acetobu...
15618689  21 sRLHAAGRSPSLQGVl--------AEIEDISAKLASHE------------VEIVMLSERLDEQDSK---CQKWtaakpet 77  Chlamydophila pneum...
15605331  16 sSVYGAGKAPSLQAIl--------AEVEDTSSRLHAHH------------NELAMISERLDEQDTK---LQQLsstqdhn 72  Chlamydia trachomatis
1722954   16 LALRFYGDAELYRLIAAASgi-adPDVVNVGQRLIMPDF-----------TRYTVVAGDTLSALALRFYGDAElnwliaa 83  Mycobacterium tuber...
15600140 437 iAQRYEVSMAALRSSn--------SLSSDNLKVGQALS------------IPSTALAAQ--------------------- 475 Pseudomonas aerugin...
15923745   1 MKKTLTVTVSSVLAFLALNn---aAHAQQHGTQVKTPVQh----------nYVSNVQAQTQSPTTYTVVAGDSlykiale 67  Staphylococcus aure...
16800409   1 --MTLKLIWDKFYVSIIFVitclvLGIILMCTVIGSGSEy----------SEVDVNEGDSIWALADQY------------ 56  Listeria innocua
15805935 246 lrveqlqrlnglkdntiav-----------gqvlrltapkpvvaaaarpapvqaapAKPAAAPGTYVVVPGDTLAKIGVK 314 Deinococcus radiodu...
16078849  57 ---------------------------------------------------------------DTKKINKNDFIEWVADK 73  Bacillus subtilis
16079836  75 yakekp-------------------------------------ksvvdvedtkpkeKKSMPYVPPMPNLQENVYPEADVN 117 Bacillus subtilis
15896156 292 vinrmeinsiddvyspetvldvkkkdyrinmikehafsetivkenievpseypnpsGIVAAYGKVIVTDKKVFENKVSIE 371 Clostridium acetobu...
15618689  78 laqkir-------------------------------------elesdqkalaktlAVLTTSVKDLQTNLQSKLQEIQK- 119 Chlamydophila pneum...
15605331  73 lprqvq-------------------------------------rletdqkalaktlAILSQSVQDIRSSVQNKLQEIQQ- 114 Chlamydia trachomatis
1722954   84 asgi------------------------------------------adpdvvnvgqRLIMPDFTRYTVVAGDTLSALAAR 121 Mycobacterium tuber...
15600140     --------------------------------------------------------------------------------     Pseudomonas aerugin...
15923745  68 hhltlnq-----------------------------------lysynpgvtplifpGDVISLVPQNKVKQTKAVKSPVRK 112 Staphylococcus aure...
16800409  57 --------------------------------------------------------------AAKSDMAKADFVSWVEKE 74  Listeria innocua
15805935 315 VGLRVEQLQRLNGLSGT--TIEVGQVLKLRGp----------------------------------------AVSVVAAA 352 Deinococcus radiodu...
16078849  74 NQLQTSDIQPGDELVIPl-KKKHQDAYELATvr----------------------------------------------- 105 Bacillus subtilis
16079836 118 DYYDMKQLFQP-----W--SPPKPEEPKKHH-----------------------------------------DGNMDHMY 149 Bacillus subtilis
15896156 372 GILNVSVLYRTSDKDNN--VYALNEDIPFANsaeiegckidmvcdvranieniestleantiaikslisfdqKVSYENDR 449 Clostridium acetobu...
15618689 120 DHRALAQDLR-----------LVRRSLLALV-----------------------------------------DSSSPGAY 147 Chlamydophila pneum...
15605331 115 EQKKLAQNLR-----------ALRNSLQALV-----------------------------------------DGSSPENY 142 Chlamydia trachomatis
1722954  122 FYGDASLYPLIAAVNGI--ADPGVIDVGQVL-----------------------------------------VIFigrsd 158 Mycobacterium tuber...
15600140     --------------------------------------------------------------------------------     Pseudomonas aerugin...
15923745 113 ASQAKKVVKQPVQQASKkvVVKQAPKQAVAKtvnvaykpaqvqksvptvpvahnynksvanrgnlyaygnctyyafdrra 192 Staphylococcus aure...
16800409  75 NNLTDGHVKAGDYVVIPvhETKLQRSDSTIQlanq--------------------------------------------- 109 Listeria innocua
15805935 353 PAPA 356 Deinococcus radiodurans
16078849     ----     Bacillus subtilis
16079836 150 HMQD 153 Bacillus subtilis
15896156 450 SFIV 453 Clostridium acetobutylicum
15618689 148 ADFS 151 Chlamydophila pneumoniae CWL029
15605331 143 IDFL 146 Chlamydia trachomatis
1722954  159 gfgl 162 Mycobacterium tuberculosis
15600140     ----     Pseudomonas aeruginosa PA01
15923745 193 qlgr 196 Staphylococcus aureus subsp. aureus Mu50
16800409     ----     Listeria innocua
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