Conserved Protein Domain Family
RbgA

?
COG1161: RbgA (this model, PSSM-Id:224083 is obsolete and has been replaced by 440775)
Ribosome biogenesis GTPase A [Translation, ribosomal structure and biogenesis]
Statistics
?
PSSM-Id: 224083
Aligned: 51 rows
Threshold Bit Score: 148.3
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1723894  164 RKLAHLQESNEDLLLTP-FERNIEVWKQLWRVVERSDLVVQIVDARNPLLFRSVDLERYVKESDDrkanLLLVNKADLLT 242 baker's yeast
19173359   7 MWRSQQCTRLSPLLGVKvEGLMFRWSWIVCSYCIFPSACYLLVPRVDIPGMPKVVLPRNIKPKVGs--pKMGIKKKRQSK 84  Encephalitozoon cun...
19704407  34 YCQRCFQLKHYGKYSVN-KMTREDYKKEVGKLLDDVKLVIAVFDIIDFEGSFDVEILDILREKDS----IVIVNKLDLIP 108 Fusobacterium nucle...
15672203  56 YCQRCFRLRHYNEIAPT-SLTDADFLRLLKEIGQHDALIVNVVDIFDFNGSLIPNLHKLTGGNDL----LMVANKRDVLP 130 Lactococcus lactis ...
15927177  36 ICRRCFRLKNYNEVQDV-GLESEDFLKLLSGLADKKGIVVNVVDVFDFEGSFINAVKRIVGNKKI----ILAANKLDLLP 110 Staphylococcus aure...
15901581  39 YCQRCFRLRHYNEITDV-QLTNDDFLKLLHEVGDSDALVVNVIDIFDFNGSVIPGLPRFVSGNDV----LLVGNKKDILP 113 Streptococcus pneum...
1175372   63 QIKKHFPNTTSFPFHEKeIGRTDLLWCQRCHDLKFHSRIRPKELLQEPQTTLPDIISTVNNDKST----CLIIQVIDVTE 138 fission yeast
15674473  39 YCQRCFRLRHYNEITDV-HITDDEFLRLLHEVGDSDALVVNVIDIFDFNGSIIPGLSRFISGNDV----LLVGNKKDILP 113 Streptococcus pyoge...
15643611  37 LCQRCFRMKHYGKLEP--VEFDWDFKNQLKSYLGGFDVVVWVIDIFDFEGTYREDIAEILKGKRV----IYVINKIDLLP 110 Thermotoga maritima
13358031  34 LCQRCFKLIHYNKLEKVsTNLNQSIKETINTLNFSNLQIFAVLDILDLEHTIIDELKEYQNKIIF------LVNKIDLLP 107 Ureaplasma urealyticum
1723894  243 KKQ-----RIAWAKYFISKN---ISFTFYSALRANQLLEKQKEMGEDYREqdfeeadkegfdadekvmekvkilsidqle 314 baker's yeast
19173359  85 RLT-----TRKREGMLKRARa-nERKKRRMDRKMQAKVERIPPSVLRTDEe----------------------------- 129 Encephalitozoon cun...
19704407 109 DEKhp-seVANWVKNRLAEE---SIVPLDIAIVSTKNGYGVN----Gv-------------------------------- 148 Fusobacterium nucle...
15672203 131 KSLkv-gkLTAWLREQAASR---SLKPKDILVTSAQNKDDVA---ELM-------------------------------- 171 Lactococcus lactis ...
15927177 111 KQInk-rrVKEWLKRTARKY---GLEADDVVLISAEKGWGID---DLL-------------------------------- 151 Staphylococcus aure...
15901581 114 KSVks-gkISQWLMKRAHEE---GLRPVDVVLTSAQNKHAIK---EVI-------------------------------- 154 Streptococcus pneum...
1175372  139 VIFqdfvsATQYTHFPVFHLfthADVLPPKKPYWLFPGLGISSKYAMLYTsh---------------------------- 190 fission yeast
15674473 114 KSVkd-gkVTQWLTERAHEE---GLRPLDVMLTSAQNKYAIK---DLI-------------------------------- 154 Streptococcus pyoge...
15643611 111 RAVtv-keIKEWVKKRIKTK----N-TDDIRIVSAEKNFGLT-------------------------------------- 146 Thermotoga maritima
13358031 108 QRYnselvNENVVKTLINHGf-iDPKIIYVSTHSNTSLKKVM-------------------------------------- 148 Ureaplasma urealyticum
1723894  315 elflskaPNEPLLPPLPGQPPLIN--IGLVGYPNVGKSSTINSLVGAKK------VSVSSTP--GKTKHFQTIKLSDS-- 382 baker's yeast
19173359 130 ------nMQYAEIKRMAKLRKMEYdeALRNSEKKEAYLDGILRLVSKSDvv--ieVIDARDPdsSRNSEAEKIVSEHGkk 201 Encephalitozoon cun...
19704407 149 ------fRKIKHFYPDG-----VN--AMVIGVTNVGKSSVINRLLGKKI------ATVSKYPg-TTIKNTLNMIPFTN-- 206 Fusobacterium nucle...
15672203 172 -------EAIEYYRRG------RD--VYVVGVTNVGKSTLINAIIKSASgse-dvITTSRFP--GTTLDKIEIPLDED-- 231 Lactococcus lactis ...
15927177 152 -------SSIANIREN------ED--VYIVGTTNVGKSTLINKLIEASVgek-dvVTTSRFP--GTTLDMIDIPLDES-- 211 Staphylococcus aure...
15901581 155 -------DKIEHYRKG------RD--VYVVGVTNVGKSTLINAIIQEITgdq-nvITTSRFP--GTTLDKIEIPLDDG-- 214 Streptococcus pneum...
1175372  191 -----sfNLVDKLLGRINPLLCSRghVYVVGEANSGKSTLLKTLAKRGNgvfnelLLDSFLP--GTTQAIKGYPTQYFgs 263 fission yeast
15674473 155 -------GRINELRNG------RD--VYVVGVTNVGKSTLINAIIQEITgnk-dvITTSRFP--GTTLDKIEIPLDDG-- 214 Streptococcus pyoge...
15643611 147 -------SLVKYLSRLT-----DK--ALVVGVTNVGKSSLLNKICTHEN-------TISPFP--GTTLGILKRKVKEAn- 202 Thermotoga maritima
13358031 149 -------DYIKNATNKK-----QK--SIFFGKSNVGKSSLINALLALNKik--tkLTISSYT--NTTINLNKINIQEH-- 208 Ureaplasma urealyticum
1723894  383 -------VMLCDCPGLVFPNFAYNk--gELVCNGVLPIDQLRDYIGPAGLVAERIPKYY----IEAIYGIHIQTK----S 445 baker's yeast
19173359 202 ------lIMVLNYTQYVPREVVDE----WKVHLKRDGNDCIEVTEEDMRQIGKETRIGIf---gNPGSGKNFVLRgisrI 268 Encephalitozoon cun...
19704407 207 -------IGLYDTPGLIPEGRASDlv-cDNCAQKIIPSGEISRKTFKAKHNRMIMIGNLv--kFKILNNDEIKP-----I 271 Fusobacterium nucle...
15672203 232 -------SALIDTPGIIHRGQIAHyl-ePEDLKYVSPRKEIKPKTYQLDPEQTLFFGGLa--rFDFISGERQGMT----A 297 Lactococcus lactis ...
15927177 212 -------SFMYDTPGIIQDHQMTHlv-sEKELKIIMPKKEIKQRVYQLNEAQTLFFGGLa--rIDYVSGGKRPLV----C 277 Staphylococcus aure...
15901581 215 -------SYIYDTPGIIHRHQMAHyl-tAKNLKYVSPKKEIKPKTYQLNPEQTLFLGGLg--rFDFIAGEKQGFT----A 280 Streptococcus pneum...
1175372  264 cfkqlseGLIFDTPGYRGNLKSLLpwvdTKLLTSLVPKTRSRNKQLTSKPVQYRVRFGQsiilGGLVRVTPFEINedgnH 343 fission yeast
15674473 215 -------TFIFDTPGIIHRHQMAHyl-sPKELKIVSPKKEIKPKTYQLNPEQTLFLGGLa--rFDFINGERQGFT----A 280 Streptococcus pyoge...
15643611 203 -------LYLYDTPGIMTSDRILDll-dPECQKRVLPREELSRKTFKPDNGRTIFMGGLc--rFDIHFETEKNPIf--lL 270 Thermotoga maritima
13358031 209 --------QILDAPGVCFDENILNyv-rDEDNKSIMISYGAKAINYQINPQQALMISGLv--gIQYLKGQKTTFT----L 273 Ureaplasma urealyticum
1723894  446 RDEGGn-GDIPTAQELLVAYARARGYMTQGYG---------SADEPRASRYILK---DYVNGKLLYVNPPPH--LEDDTP 510 baker's yeast
19173359 269 LEEKPnsVVVSVPLSKVTLSSILRGCHGLMGIa--------FRDYIEAIVKRIDrgeVSLRHGIPEFSNAEEllESICDV 340 Encephalitozoon cun...
19704407 272 FSIYAakDVQFHETTIEKSKELELGNFFTIPCdcckeeynkHKKINKTLTINTGe--ELVFKGLAWVSVKRG--PLNIQV 347 Fusobacterium nucle...
15672203 298 YFDNEinVHRTKLEGATEFYEKHKGELLAPal--------vgAKLVRREFKITDk-sDIVFSGLGWVRVPQ------KAV 362 Lactococcus lactis ...
15927177 278 FFSNDlnIHRTKTEKANDLWRNQLGDLLTPPGnpq---nfdLNELKAVRLETGKekrDVMISGLGFITIGP------GAK 348 Staphylococcus aure...
15901581 281 FFDNElkLHRSKLEGASAFYDKHLGTLLTPPNske---kedFPRLVQHVFTIKDk-tDLVISGLGWIRVTG------IAK 350 Streptococcus pneum...
1175372  344 EVGKPimFKKEDPSSTTIHFLFSTLKNKKTKGn--------TNNMKPLLIKLFTklpAHITSITKLQSLENStkNDNVPL 415 fission yeast
15674473 281 FFDNQleLHRTKLAGADAFYDKHVGTLLTPPDkke---ltaFPKLVRHEFTIDQk-mDIVFSGLGWIRVNGQ--KDSKAI 354 Streptococcus pyoge...
15643611 271 FSSKEvtFHETRRERADELMRNRLGDLLIPPCskt---kfeNFKWKRETFTLKEg-eELAVAGLGWMSVRRG--PFTVEV 344 Thermotoga maritima
13358031 274 YVSSQldIHRCKLENFIMNFNKRYLLAKFNYLnq------dLEFVDHLITLNKDqktNICIAGLGLLVINAH--AEQICI 345 Ureaplasma urealyticum
1723894  511 YTREECEEFNKDLYVFDR 528 baker's yeast
19173359 341 HGIRDESRSVCYMKASER 358 Encephalitozoon cuniculi
19704407 348 TLPEEIEISVRKAFINPR 365 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
15672203 363 VAAWVPEGVDVVVRKALI 380 Lactococcus lactis subsp. lactis
15927177 349 VIVRVPKNVDVVLRNSIL 366 Staphylococcus aureus subsp. aureus N315
15901581 351 VAVWAPEGVAVVTRKAII 368 Streptococcus pneumoniae TIGR4
1175372  416 VTHSPSPMHSSFTVSIKP 433 fission yeast
15674473 355 VAAWAPEGVAVIVRKAII 372 Streptococcus pyogenes M1 GAS
15643611 345 TVPDSVKLVVREALVNPK 362 Thermotoga maritima
13358031 346 RLPKSVGLKVAKYAII-- 361 Ureaplasma urealyticum
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap