Conserved Protein Domain Family
SrmB

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COG0513: SrmB (this model, PSSM-Id:223587 is obsolete and has been replaced by 440279)
Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Statistics
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PSSM-Id: 223587
Aligned: 218 rows
Threshold Bit Score: 48.2478
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1723792  800 RNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCHEIYMAdtPSVAVQAPPGYG 879  baker's yeast
6319357  314 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKSTNDILVAGRKLFGSSFEFRDLHQLRLCHEIYMAdtPSVAVQAPPGYG 393  baker's yeast
6320756  161 RNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCYEIYMAdtPSVAVQAPPGYG 240  baker's yeast
1175970    1 ----------------------------------------------------------------MAdtPSVAVQAPPGYG 16   baker's yeast
731626     1 ----------------------------------------------------------------MAdtPSVAVQAPPGYG 16   baker's yeast
731585   250 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKSTNDILVAGRKLFGSSFEFRDLHQLRLCHEIYMAdtPSVAVQAPPGYG 329  baker's yeast
731903   607 RNAEDVVAGEAASSNHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCYEIYMAdtPSVAVQAPPGYG 686  baker's yeast
1176490  607 RNAEDVVAGEAASSNHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCYEIYMAdtPSVAVQAPPGYG 686  baker's yeast
6322961  145 RNAEDVVAGEAASSDHDQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCHEIYMAdtPSVAVQAPPGYG 224  baker's yeast
6325462    1 ----------------------------------------------------------------MAdtPSVAVQAPPGYG 16   baker's yeast
1723792  880 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLSRCGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 959  baker's yeast
6319357  394 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRRGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 473  baker's yeast
6320756  241 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRCGCLNVApvrNFIeegydgVTDLYVGIYDDLASTNFTDr 320  baker's yeast
1175970   17 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRRGCLNVApvrNFIeegydgVTDLYVGIYDDLASTNFTDr 96   baker's yeast
731626    17 KTELFHLPLIALASKGDVEYVSFLFVPYTVLLANCMIRLGRCGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 96   baker's yeast
731585   330 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRRGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 409  baker's yeast
731903   687 KTELFHLPLIALASKGDVEYVSFLFVPYTVLLANCMIRLGRCGCLNVApvrNFIeegydgVTDLYVGIYDDLASTNFTDr 766  baker's yeast
1176490  687 KTELFHLPLIALASKGDVEYVSFLFVPYTVLLANCMIRLGRRGCLNVApvrNFIeegydgVTDLYVGIYDDLASTNFTDr 766  baker's yeast
6322961  225 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRCGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 304  baker's yeast
6325462   17 KTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRCGCLNVApvrNFIeegcdgVTDLYVGIYDDLASTNFTDr 96   baker's yeast
1723792  960 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 1039 baker's yeast
6319357  474 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 553  baker's yeast
6320756  321 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 400  baker's yeast
1175970   97 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 176  baker's yeast
731626    97 iAaWENIVECTFRTNNVKLGYlivdELHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 176  baker's yeast
731585   410 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 489  baker's yeast
731903   767 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 846  baker's yeast
1176490  767 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 846  baker's yeast
6322961  305 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 384  baker's yeast
6325462   97 iAaWENIVECTFRTNNVKLGYlivdEFHNFETEVYRQSQFGGITNLdfdAFEKAIFLSGTAPEAvadaaLQRIGLTGLAK 176  baker's yeast
1723792 1040 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 1119 baker's yeast
6319357  554 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 633  baker's yeast
6320756  401 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIRKKVESQPeEALKLLLALFESEPESKAIVVASTTNEV 480  baker's yeast
1175970  177 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 256  baker's yeast
731626   177 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSKVPLG------------------------------------------ 214  baker's yeast
731585   490 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 569  baker's yeast
731903   847 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIRKKVESQPeEALKLLLALFESEPESKAIVVASTTNEV 926  baker's yeast
1176490  847 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIRKKVESQPeEALKLLLALFESEPESKAIVVASTTNEV 926  baker's yeast
6322961  385 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 464  baker's yeast
6325462  177 KSmDINELKRSEDLsRGLssyPTRMFnliKEKSEVPLGHVHKIWKKVESQPeEALKLLLALFEIEPESKAIVVASTTNEV 256  baker's yeast
1723792 1120 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 1199 baker's yeast
6319357  634 EELACSWRKYFRVVWIHGKLGCCRKGVSHKGVCh---------------------------------------------- 667  baker's yeast
6320756  481 EELACSWRKYFRVVWIHGKLDAAEKVSRTKEFVtDGNMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 560  baker's yeast
1175970  257 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 336  baker's yeast
731626       --------------------------------------------------------------------------------      baker's yeast
731585   570 EELACSWRKYFRVVWIHGKLGCCRKGVSHKGVCh---------------------------------------------- 603  baker's yeast
731903   927 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 1006 baker's yeast
1176490  927 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 1006 baker's yeast
6322961  465 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 544  baker's yeast
6325462  257 EELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVtDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD 336  baker's yeast
1723792 1200 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 1279 baker's yeast
6319357      --------------------------------------------------------------------------------      baker's yeast
6320756  561 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 640  baker's yeast
1175970  337 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccvC------------------------ 392  baker's yeast
731626       --------------------------------------------------------------------------------      baker's yeast
731585       --------------------------------------------------------------------------------      baker's yeast
731903  1007 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 1086 baker's yeast
1176490 1007 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 1086 baker's yeast
6322961  545 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 624  baker's yeast
6325462  337 GGlcyllsrknswaarnRKGELPPIKEGciTEQVREFYGLESKKGKKGQhvgccgSRTDLSADTVELIermdrlaekqat 416  baker's yeast
1723792 1280 aSMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSAnast------------------------------------- 1322 baker's yeast
6319357      --------------------------------------------------------------------------------      baker's yeast
6320756  641 aSMSIVALPSNFQESNSSDRYRKYCSSDEDSNTCIHGSAnastnastnaittastnvrt------------nattnastn 708  baker's yeast
1175970      --------------------------------------------------------------------------------      baker's yeast
731626       --------------------------------------------------------------------------------      baker's yeast
731585       --------------------------------------------------------------------------------      baker's yeast
731903  1087 aSMSIVALPSSFQESNSSDRYRKYCSSDEDSNTCIHGSAnastnastnaittastnvrtnattnastnattnastnastn 1166 baker's yeast
1176490 1087 aSMSIVALPSSFQESNSSDRYRKYCSSDEDSNTCIHGSAnastnastnaittastnvrtnattnastnattnastnastn 1166 baker's yeast
6322961  625 aSMSIVALPSSFQESNSSDRCRKYCSSDEDSNTCIHGSAnast------------------------------------- 667  baker's yeast
6325462  417 aSMSIVALPSSFQESNSSDRCRKYCSSDEDSNTCIHGSAnast------------------------------------- 459  baker's yeast
1723792 1323 -------natTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNSSTNatttastnvrtsatttas---------- 1385 baker's yeast
6319357      --------------------------------------------------------------------------------      baker's yeast
6320756  709 attnastnatTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNsstnatttasinvrtsatttksinss------ 782  baker's yeast
1175970      --------------------------------------------------------------------------------      baker's yeast
731626   215 --------------TNATTTASTNVRTSATTtasInvrtsatT------------------------------------- 243  baker's yeast
731585       --------------------------------------------------------------------------------      baker's yeast
731903  1167 attnastnatTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNSSTNatttestnsstnatttestnsntsattt 1246 baker's yeast
1176490 1167 attnastnatTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNSSTNatttestnsstnatttestnsntsattt 1246 baker's yeast
6322961  668 -------natTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNSSTNatttastnvrtsatttasinvrtsattt 740  baker's yeast
6325462  460 -------natTNSSTNATTTASTNVRTSATTtasInvrtsatTTESTNSSTNatttastnvrtsatttasinvrtsattt 532  baker's yeast
1723792 1386 --------------------------invrtsatttestnsntSATTTESTDSNTSATTTESTDSNTSATTTAST 1434 baker's yeast
6319357      ---------------------------------------------------------------------------      baker's yeast
6320756  783 ------------------tnatitestnsntnatttestnsktSATTTASTNSNTSATTTESTNSKTSATTTAST 839  baker's yeast
1175970      ---------------------------------------------------------------------------      baker's yeast
731626   244 -----------------------------------------------TASINVRTSATTTESTNSNTNATTTEST 271  baker's yeast
731585       ---------------------------------------------------------------------------      baker's yeast
731903  1247 asinvrtsatttestnsstsatttasinvrtsatttksinsstNATTTESTNSNTNATTTESTNSSTNATTTEST 1321 baker's yeast
1176490 1247 asinvrtsatttestnsstsatttasinvrtsatttksinsstNATTTESTNSNTNATTTESTNSSTNATTTEST 1321 baker's yeast
6322961  741 es------------tnsntsatttestdsntsatttestdsstNATTTASINVRTSATTTESTNSNTNATTTEST 803  baker's yeast
6325462  533 es------------tnsntsatttestdsntsatttestnsstNATTTASINVRTSATTTESTNSNTNATTTEST 595  baker's yeast
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