Conserved Protein Domain Family
PHA03369

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PHA03369: PHA03369 
capsid maturational protease; Provisional
Statistics
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PSSM-Id: 223061
Aligned: 5 rows
Threshold Bit Score: 654.761
Created: 9-Dec-2010
Updated: 16-Jan-2013
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
282174094  16 RRLIRDPNKFSFVGKRPDGSYVatkswtQKVTNCSTEVDQFMGRTGSQLKELSDDEQVPVFCDKCphgYTKRWSELDTVF 95 
109638628   1 MAAETYYKSPMVYIKKPNGVHC------YNMQNMQHKLLPALPPELKNLTPRNPEHFVPALCAQC---YGSVEEDYEEVR 71 
109638482  84 TRKTAFLHGTDVYVSRPDGTL-------RYSLEPGCACEPVETVPSCVLTASLDEHFVPVLCDLC---FGHTKEEYEAVR 153
9626849     7 RGTVKIETRERIWVRRVNGETGvydtraGSFETVSCQEFEAAADTVPS---------VPVFCDRC---FGTSLYEVPLTG 74 
131840104  14 HLTESRTEGLSFHGQRPDGTILav--drGRLLCTHADIDELERTLLGSSAPVSHKDLVPIYCDRC---LPYTLP-WSQAP 87 
282174094  96 PGGVFRQvpkvkgYWIVGTAGVFSDRMLC-DENLVAARKPHETKREVVARYHLPRNNLELFCHP-RASRnelnFLYQHkK 173
109638628  72 KGISADS------SYLLGMAGTCDTTAHDyDPSLYPSTSAGDMDKESFPKYHLDYDNAKYMCHV-APGK----VLWRH-A 139
109638482 154 SGLSLDQs----tGYGVGMAGVFAENSKP-GANYPPPVGDGDINPSAMGRYQLLRADAPYIVHP-KPAR----LLWEH-K 222
9626849    75 FG-----------TFVVGTCCIFSPGDPVdDPSI----------PAHMRKYQQPIEAHQTMVQV-APGT----LKYSH-- 126
131840104  88 VSHDRDGllpahgYTVVGTAGVFSRDLVE-----------TKGMEKTSQHYHLPLRDLELFTHTqKSNR----VLLVH-C 151
282174094 174 SVPLGRVLAYWHIHgpadrENETVAVNVLTSIENPPDRLQPFIELST------GLSWSTLTVTQHCVAVELSLVSLPGRT 247
109638628 140 GEEIGNVVCYWHVH-----TPTSCGVNALVKLDAEKQNARVALAQIMt----aGFSWTTTVTGEKDIIVELSAVHLPARP 210
109638482 223 GKALGEVLSYWHVH-----RKDACGVNALVQVGNDERGTDFWNIGRShv---sGFSWCTVDRGKRDVVVELSAVLVPARK 294
9626849   127 QIPMGKVLGYWHVH-----MEDRVYLNMIGGIDESEDTGKRCVETFTeadipcALSLGTLDVGLNEVILECSVVVIPARR 201
131840104 152 DIPIGSVICYWHVHd---rENAHCAVNALIVITDQAF-----HTIFSrc---kGLSWTTTSV----VASELSLVGIPGRA 216
282174094 248 SSLIlqKYRRTADTPSSSaypvceepdLSMFGFGNT------SMHDLLYASLSAAFtedktaHEVDGIPNSQQPDSTEST 321
109638628 211 GCFA--THCKGAEETLGL---------MEKLNFRANvllqgeAPLNGILEILKAKN------IEMPAELTKTKESFDDPK 273
109638482 295 GCYA--TFVPGPRLNEV----------LNIMHYGPNrdrnptTYVNAMLTASAGEDdnplvrLIMEQQRSPSPSHVPDSA 362
9626849   202 GCHA--KLFTRDTVSDG----------LEKFCFQSH--------------------------ATLPPTLLASFGSTSESP 243
131840104 217 SSLI--HSISRLSDLTQGtlpvsrkpdLRSLGYGRNsprhadVVMAALS----------------KGTENPEETASDQRR 278
282174094 322 AWYEIALAFAKQINFLYSVL-----TKDDRVGKDYLNQGERVFRHINRLQEQMQAALTLSAVPPNQEIEAASKVPVAEPT 396
109638628 274 EYVALLEEYAKVLFDKSRMLevmykKKGECVAETHIKLGAEKFQTINGEKASNSIVKNKVLTAQAEPSAPAAEVIEMAAP 353
109638482 363 EEGTFERELIDTIRKQLKTArllrkHRDDSALGCHNRVGRQEFETINGARAHEEILSTAAMISATATNAAAAAPTSGGAP 442
9626849   244 ERKTFYEAHVDALNNYIKLLrtiysHKGETEIEQYLIEGSKLYSELIG--------------EPSRVLDATMKAAQIAEP 309
131840104 279 EWKQMVEMLMGQLDLLYEATiakgpDDDGQASKRYLSEGRDLFKKLHELKAHLEKLESASTPAAVSAAAPAPSTSVPAPQ 358
282174094 397 ETPASPTSEKVGSAVQTDTSVEPAEQSTSAPVAVdlavdaadpvdptdpt-----ppttsaqpppvepvePEPTATSTMA 471
109638628 354 APAPVASMQQPPAQHPCYQYAPPPPSHMYAYPPV------------------------------------PTPSEPRYTE 397
109638482 443 QTYYCPApi------------------------------------------------------------pPSSTSLEDMR 462
9626849   310 QTHTGGADRQRPQRPDGIPYSVPDRFPMTGYPFApqfcgdpglvshynpfvp-pqsfgqgygpervggyyPQPPNPYVLP 388
131840104 359 QTTETPKEDSRAGTPEASVTSQQAQSAPVPSQPVtsvpsqpvtsvpsqpvtsvpsqpvtsvpsqpvtsvpSQPVTSVQQP 438
282174094 472 DKMDNltslmtqfmeqmnktntttst-------------------------------------papqssrddfrdsvmmt 514
109638628 398 ESIAK--------------------------------------------------------------------------- 402
109638482 463 RELSN--------------------------------------------------------------------------- 467
9626849   389 ISYGQ--------------------------------------------------------------------------- 393
131840104 439 NKMASsddirdavakaladvikpsiqqytpppqpnhgggatgfrdfvemfklmqqmhapaqapapvaapapvvaqvpqsl 518
282174094 515 lfksMLPTTQAVEVQKETRKRRANDMDDETWKEFQQLKKYKEEqeaktkeaemmtrLSAMVSEAVTKALPAPAATPAAAP 594
109638628 403 ----MVLEQLEKKESEARKRKKEEEMNESLTVFRTEVAKLKEE-------------MGRMQKSKEEEQAAAKVDSASALI 465
109638482 468 ----MVAAALETERVSERKRKADDELRENILEMGKRVRTIEQTnetlaklltatahSGEIKNIALSRFPTYEAGTGSA-- 541
9626849   394 ----QPYPGHPQPHGHHQQRSGGGDLKAELIETLGLAPKTNAVqe---------slKSFISEILESELKNCGIKRAAGNI 460
131840104 519 shhgLVDDEHPSTSAHQRGGKRKLELSDDDI---KLFKKLREQdelsrrekerlalKEELKKEMMAEFSSSVPQAAAPVV 595
282174094 595 APAPTPAAAAPVQQPPPDPTAEIVAQLKEFKEQ------LNTLMKPAADQSKTADTAAAAAAGGSTTAENVAGAAKTISN 668
109638628 466 KQVASASVGAPANHVSGITTQFDLERVMKILTDc----iIRNMESGMFVHADAPVSEPYIEAAGKKIAEAFKGYVSKQKS 541
109638482 542 ----ETCDAMQAIHTGSAQTLNELASMNRFYAA-----------------PPTRGNVVGNAVVGSSSQDVIAGFLRELTT 600
9626849   461 ERNCDVDEEPPRTKRARPEPKTAVEAIVRAPYG-----------------DFDSTALTTKIGQVSDTVEKLNKVIETLLT 523
131840104 596 VPSTSAPAPVTDVKQLVSEAIKELLAVQQQQQQqavvpaPQGVPGPATTISLPVATLAAATGRSPAAAAALQSAINNVHE 675
282174094 669 NVT--IPSGPHLTVGGVPLNALTSASLDPTT-------------KIETFSAADQKFLGSQLC 715
109638628 542 KAKe-DDDEEEEEAPAKSVVKASAKSTKKAKtqaavaqetderpSASTYTPTANELETKTLV 602
109638482 601 IMRsvNDKNGTGVLPAGAPTAAIPAPLPPPR-------------STDSAPPEHHPIISKESK 649
9626849   524 QSSa-QPAPLSTPAQAAPVQPSLPQPVPEPLapqeppppgtsapTLEASLPQQKPVVSKGAF 584
131840104 676 SASqlVPGGLNLGVAGVPVNASTVVSTPQPAvpststqvvsvsaGLEVQGGGNKKSLNDDAR 737
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