Conserved Protein Domain Family
BEN
?
smart01025: BEN 
The BEN domain is found in diverse animal proteins.
Proteins containing BEN domains are BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, the chordopoxvirus virosomal protein E5R and several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription.
Links
?
Statistics
?
PSSM-Id: 214981
Aligned: 39 rows
Threshold Bit Score: 43.5066
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
XP_001662913  261 RLFISKLAVAVFGVDVL-------VNSSVTGkps---nahHNIPP--KPPLCPEKIAAIEAKLYERVeqevgrsNRAELL 328  yellow fever ...
XP_002937205  275 GDLACRLLVQLFPELFG-------SDGYSRNcs------tCGYIN--KTKLESLHLQLIRNYVEVCY-------PSVKNT 332  western clawe...
NP_001192483  190 QKFINDLMQVLYTNEYM-------ATHSLTGak-----ssTSRDKavKPAMNQNEVQEIIGITKQLF-------PSTDDA 250  cattle
CAF96647      246 DRYASYVFRYLVPYNK--------YCEWVTKvn-------yNGLMg--KEaLPTNVRRAMRLYIERRf-------PTLSC 301  spotted green...
NP_001037777 1115 DRYGCLLFRVIVPQTK--------YKEWASNtn-------wDGSRg--KCaLPVNLRSFIIDTVSQRf-------PGLSD 1170 zebrafish
XP_002940161  234 HRFAELLFQHHVPHSL--------YQLWANKvn-------vDGSRg--KVaLPRNLVMDIMHQTSKRf--------VLGP 288  western clawe...
XP_001648228  388 LRFVSKLALALWGHERL-------AVSSVTGrksn--nasNNSTP--SIQLEPEKLSFIKEKVYHRA-----------MQ 445  yellow fever ...
CAQ14729      295 SKFTKNLAVMIWGTETL-------KNRSVTGva-----tkKKKDAlpKPPLSPSKLKIVRECLYDRV--------SQETA 354  zebrafish
XP_001662910  328 GKFISALADQLWTRDQL-------AARSVRGkqc---yrhPESST--HIPASPTKVSFIHDKLMQRI-------NLEERE 388  yellow fever ...
XP_001648231  309 YLFVKSIMEDLWPDGFAgrsvtgrASNNASGrsgkatlptAPPEQspKVPLEAHKVEYIRDRLLERR--------ILLGD 380  yellow fever ...

XP_001662913  329 QRSgekvvrlVV-CQKSVNLRKQVQKRS 355  yellow fever mosquito
XP_002937205  333 GIW-------QVeCLPQLNDFFNQFWAQ 353  western clawed frog
NP_001192483  251 SIR-------RM-IGQKLNNCTKKPNLS 270  cattle
CAF96647      302 DHw------rE---IRDAINEILRVKRK 320  spotted green pufferfish
NP_001037777 1171 VDr------kC---IKDRINEFLRSPRN 1189 zebrafish
XP_002940161  289 KEk------qK---IIARLNFMLRTRHG 307  western clawed frog
XP_001648228  446 E------------TNDRVQAMARFDDSR 461  yellow fever mosquito
CAQ14729      355 D-------------SAEITQRLSKVNKY 369  zebrafish
XP_001662910  389 DDDprrklqsR--VSHKLNEKFKNARRL 414  yellow fever mosquito
XP_001648231  381 D------------RIKAIHE-CKQANKL 395  yellow fever mosquito
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap