Conserved Protein Domain Family
SH3_SKAP1

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cd12044: SH3_SKAP1 
Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1
SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212977
Aligned: 4 rows
Threshold Bit Score: 113.03
Created: 6-Mar-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
peptide ligand
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                   ##            # ## 
Q1KKW7       305 YYQGLWDCSADEPDELPFQRGDLIYIISKEYNIYGWWVGELNGAVGIVPKDFL 357 torafugu
NP_003717    298 YYQGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 350 human
NP_001004990 287 YYQGLWNCFSDNSDELSFERGDLIHILSKEYHAYGWWVGELDGIVGIVPKDYL 339 western clawed frog
XP_003222663 306 YYQSLWDCTGSHPDELSFQRGDLIYIISKVYNMYGWWVGLLNSTVGIVPKDYL 358 green anole

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