2CSI


Conserved Protein Domain Family
SH3_RIM-BP_3

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cd12013: SH3_RIM-BP_3 
Click on image for an interactive view with Cn3D
Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212946
Aligned: 14 rows
Threshold Bit Score: 117.095
Created: 7-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #           #                  ##             # ##   
2CSI_A          9 RMVALYDYDPRESSPNVDv-EAELTFCTGDIITVFGEIDEDGFYYGELNG-QKGLVPSNFLEE 69   human
XP_002935228  983 KMVAIFDYNPRENSPNMDv-EAELNFTAGDLITVFGPMDEDGFYYGELNG-LRGLVPSNFLES 1043 western clawed frog
XP_002124083 1102 LYVALFDYDPKESSPNIDa-EAELSFASGDLIHVHGVMDEDGFFRGERNG-CFGLVPSNFLEE 1162 Ciona intestinalis
NP_001163620 1218 RMIALYDYDPQELSPNVDaeQVELCFKTGEIILVYGDMDEDGFYMGELDG-VRGLVPSNFLAD 1279 fruit fly
NP_497459    1108 RMVAKFDYDSRQLSPNVDaeQVELSFRQGDIIIVLGDMDEDGFYMGELNG-LRGLVPSNFLQP 1169 nematode
XP_001202010 1089 RMRALFDYNPQELSPNPDl-DVELSFRQGDNLMVYGEMDDDGFFVGELRG-KRGLVPSNFLEE 1149 purple urchin
XP_001631713   91 KMIALFDYDPRILSPNPDs-EVELSFHVGDVVLVYGEMDEDGFFTGELNG-LRGLVPSNFLED 151  starlet sea anemone
EFX79637      751 RMIALYDYDPQELSPNVDa-EVELSFQTGDIIYVYGDMDDDGFYLGELRG-QRGLVPSNFLTE 811  common water flea
GAA48100     1387 QMVALYDYDPSVLSPNADa-DRELSFRSGERIVVYGEMDEDGFYEGELSDgRRGLVPSNFLRD 1448 Clonorchis sinensis
NP_077729    1708 SMVAAFDYNPQESSPNMDv-EAELPFRAGDVITVFGGMDDDGFYYGELNG-QRGLVPSNFLEG 1768 human

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