2CSQ


Conserved Protein Domain Family
SH3_RIM-BP_2

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cd12012: SH3_RIM-BP_2 
Click on image for an interactive view with Cn3D
Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212945
Aligned: 18 rows
Threshold Bit Score: 119.319
Created: 7-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #            #                  ##             # ##   
2CSQ_A         19 IFVALFDYDPLtMSPNPDa-AEEELPFKEGQIIKVYGDKDADGFYRGETCA-RLGLIPCNMVSE 80   human
BAJ99763      946 LFIALFDYDPNaMSPNQD--SEEELPFKKGQIIKIFGDQDADGFYIGQTENgRTGYVPSNMVSE 1007 domesticated barley
XP_002124083  972 LYVALYDYNPYtMSPNQDc-LQDELSFTEGQLIKVYGEKDADGFYMGEKHNgKRGYVPCNMVSE 1034 Ciona intestinalis
XP_002115365 1957 LFVALYNYDPEvMSPNPLdvAEEELPFKQGDIIKIYGDKDGDGFYKGELNN-RTGYVPCNMVCE 2019 Trichoplax adhaerens
XP_001202010  968 YFIAIFDYNPAiMSPNIDg-AEEELFLKEGDLLKIIGDKDADGFFVGEMNG-RRGYVPCNMVEE 1029 purple urchin
EFV61946      769 CLVAMYDYNPKhMSPNYNa-VRDELSFQRGQLIRLLEDPDPDGFYLGQING-RIGLVPSNLVVE 830  Trichinella spiralis
CCD59203     1216 VVVALYDYDPTtMSPNIDg-AQEELPFREGQLIKILTECDEDGFYLGECNG-LRGLVPSNMVSE 1277 Schistosoma mansoni
NP_497459     772 WFVALFDYTAA-MSPNPNa-EFEELQFRKHQLIKVYGGQDIDGFYHGAIGQ-RVGLVPSNMVIE 832  nematode
EFX79637      657 IFVALFDYDPPtMSPNPDa-CDEELPFREGQLIKVRGDKDADGFYWGEVAG-RSGYVPCNMVSE 718  common water flea
XP_002161110  968 VFVALYNYDPItMSPNIDf-ASEELGFEEGDLIQIYGSMDEDGFYLGELKN-VKGLVPSNMVKE 1029 green hydra

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