1DKG,1MWM,3H1Q,1JCG,1GLF,3CJ1,1T6D,3MCP,2IIR,1X3M,1K8K,1G99,3DWL,1K8K,1XC3,1E4G,1Q18,2GUP,3HTV,3B8A,2CH6,2QM1,1Z05,1Z6R,2AP1,2HOE,1YAG,1C0F,3B63,3LUE,1D4X,2HF3,1NBW,2D0O,2AA4,1BDG,3ENH,1HKB,1HKC,1HKC,1HKB,1V4T,1X9J,2E8A,2V7Y,2QXL,2E2N,1HUX,1WOQ,1GLD,1ZBS,1OKJ,1ZC6,3LM2,3DJC,3BEX,2A6A,2CGL


Conserved Protein Domain Family
NBD_sugar-kinase_HSP70_actin

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cd00012: NBD_sugar-kinase_HSP70_actin (this model, PSSM-Id:212657 is obsolete and has been replaced by 466786)
Click on image for an interactive view with Cn3D
Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure.
Statistics
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PSSM-Id: 212657
Aligned: 124 rows
Threshold Bit Score: 33.3312
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
nucleotide
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:based on the structures of various sugar kinase/actin/heat shock protein 70 superfamily members with bound ATP/ADP analogs
  • Structure:2QXL:the yeast nucleotide exchange factor Sse1p-NBD binds MgATP, contacts at 4A
    View structure with Cn3D
  • Structure:2E8A: human heat shock 70 kDa protein 1A/1B-NBD binds MgAMPPNP, contacts at 4A
    View structure with Cn3D
  • Structure:2V7Y: Geobacillus kaustophilus DnaK-NBD binds, MgADP and Pi (hydrolyzed MgATP), contacts at 4A
    View structure with Cn3D
  • Structure:1GLD: Escherichia coli glycerol kinase binds MnADP, contacts at 4A.
    View structure with Cn3D
  • Citation:PMID 8430315
  • Structure:2CGL: Escherichia coli L-rhamnulose kinase binds ADP, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #### # #                                                                     
1DKG_D      5 IGIDLGTtNSCVAIMdgttprvlenaegdrTTPSiiaytqdgetlvgqpakrqavtnpqntlfaikrligrrf---qdee 81  Escherichia coli
1Q18_A     17 LVGDVGGtNARLALCdiasge----isqakTYSGld-------------------------------------------- 48  Escherichia coli
2HOE_A     90 LGIEVTRdEIAACLIdasxn-----ilaheAHPLpsqs------------------------------------------ 122 Thermotoga maritima
3ENH_A      9 LGLEGTAeKTGVGIVtsdge-----vlfnkTIMYkppkqgin-------------------------------------- 45  Methanocaldococcus...
2QXL_A      4 FGLDLGNnNSVLAVArnrgidivvnevsnrSTPSvvgfgpknrylgetgknkqtsnikntvanlkriigldyhhpdfeqe 83  baker's yeast
1OKJ_A     24 LAIDTATeACSVALWndgt-------vnahFELCpr-------------------------------------------- 52  Escherichia coli
3LM2_A      9 LAIDIGGsHVKIGLStdg---------eerKVESgktx------------------------------------------ 37  Agrobacterium tume...
2A6A_A     16 LALDTSQ-RIRIGLRkged-------lfeiSYTGek-------------------------------------------- 43  Thermotoga maritim...
NP_603687  96 IGVSIDEeKIRFIVIntigk-----ilqskEIETtden------------------------------------------ 128 Fusobacterium nucl...
NP_227848  83 IIYNVEVlETLVAVGfldg-------awriIERFstpkdfde-------------------------------------- 117 Thermotoga maritim...
Feature 1                                                                                     
1DKG_D     82 vqrdvsimpfkiiaadngdawvevkgqkmappqiSAEVLKKMKKTaedyl---gepvTEAVITVPayfndaqrqat---- 154 Escherichia coli
1Q18_A     49 --------------------------------ypSLEAVIRVYLEehk------vevKDGCIAIAcpitgdwvaxtnhtw 90  Escherichia coli
2HOE_A    123 ------------------------------dreeTLNVXYRIIDRakdxxeklgsklSALTVAAPgpidtergiiidprn 172 Thermotoga maritima
3ENH_A     46 ---------------------------preaadhHAETFPKLIKEafevv--dkneiDLIAFSQGpglgpslrvtat--- 93  Methanocaldococcus...
2QXL_A     84 skhftsklvelddkktgaevrfagekhvfsatqlAAMFIDKVKDTvkqdt---kaniTDVCIAVPpwyteeqryni---- 156 baker's yeast
1OKJ_A     53 ---------------------------------eHTQRILPMVQDilttsgtsltdiNALAYGRGpgsftgvrigig--- 96  Escherichia coli
3LM2_A     38 ------------------------------tgpeXVAAVTAXAKDxt---------yDVIAXGYPgpvvhnkplrepvnl 78  Agrobacterium tume...
2A6A_A     44 ---------------------------------kHAEILPVVVKKlldeldlkvkdlDVVGVGIGpggltglrvgia--- 87  Thermotoga maritim...
NP_603687 129 ------------------------------flifFERNLKYFIEEidpky---lakvIGVGISIPgiynkenhflefnni 175 Fusobacterium nucl...
NP_227848 118 --------------------------fkqrvtssYENILKSHVLNkn---------iSKVVFSLPgivnteskflihapn 162 Thermotoga maritim...
Feature 1                             #                                 ####                  
1DKG_D    155 --------kdagriagleVKRIInEPTAAALaygldkg-----------tgnrtiAVYDLGGg-----tFDISIieidev 210 Escherichia coli
1Q18_A     91 ----afsiaexkknlgfsHLEIInDFTAVSXaipxlkkehliqfggaepvegkpiAVYGAGTg------LGVAHlvhvd- 159 Escherichia coli
2HOE_A    173 fplsqiplanllkekygiEVWVEnDADXGAVgekwyt------------krddsfAWILTGKg------IGAGIiidgel 234 Thermotoga maritima
3ENH_A     94 -------vartlsltlkkPIIGVnHCIAHIEigklt---------------teaeDPLTLYVsgg-ntqVIAYVs----- 145 Methanocaldococcus...
2QXL_A    157 --------adaariaglnPVRIVnDVTAAGVsygifktdlp-----egeekprivAFVDIGHs-----sYTCSImafkkg 218 baker's yeast
1OKJ_A     97 -------iaqglalgaelPMIGVsTLMTMAQgawrkn-------------gatrvLAAIDARmg----eVYWAEyqrden 152 Escherichia coli
3LM2_A     79 ---gegwvgydyegafgrPVRIVnDALXQAIgsyn----------------ggrxLFLGLGTg------LGAAXive--- 130 Agrobacterium tume...
2A6A_A     88 -------tvvglvspydiPVAPLnSFEXTAKscp------------------adgVVLVARRarkgyhyCAVYLkdk--- 139 Thermotoga maritim...
NP_603687 176 d-ryessiikkleeniklPIWVEnEANMSILaeaiigk----------hkdladfTVISINNk-----vTCSTFykfgnk 239 Fusobacterium nucl...
NP_227848 163 l-gwrnidfrrefgnldlEVLVEnDSNLSLLaeeffsqd---------vkesdvaFFLYFGEg------IGGAIsvngki 226 Thermotoga maritim...
Feature 1                                                                                     
1DKG_D    211 dgektfevlATNGDthlggedfdsrlinylveefkkdqgidlrndplamqrlkeaaekakielssaqqtdvnlpyitada 290 Escherichia coli
1Q18_A    160 ----krwvsLPGEGghvdfapnseeeaiileilraeighvsaervlsgpglvnly---------raivkadnrlpenlkp 226 Escherichia coli
2HOE_A    235 ---yrgengYAGEIgytrvfngneyvfledvcnenvvlkhvl-----------------------------------sxg 276 Thermotoga maritima
3ENH_A    146 --------kKYRVFgetldiavgncldqfaryvnlphpggpyieelarkgkklvdlpy---tvkgmdiafsglltaamra 214 Methanocaldococcus...
2QXL_A    219 ----qlkvlGTACDkhfggrdfdlaitehfadefktkykidirenpkaynriltaae----klkkvlsantnapfsvesv 290 baker's yeast
1OKJ_A    153 g--iwhgeeTEAVLkp---------------------------------------------------------------- 166 Escherichia coli
3LM2_A    131 ------nvaQPXEIahlpyrkgktyehyvse------------------------------------------------- 155 Agrobacterium tume...
2A6A_A    140 ------glnPLKEPsvv--------------------------------------------------------------- 150 Thermotoga maritim...
NP_603687 240 ---sedyffKASRVhhmivdyenkkkvgdcisfkilkdkileaf------------------------------pniknl 286 Fusobacterium nucl...
NP_227848 227 ---vrgenfAAGEIghvvldvkn--------------------------------------------------------- 246 Thermotoga maritim...
Feature 1                                                              #                      
1DKG_D    291 tgpkhmnikvtrakleslvedlvnRSIELLKVAlqdagl-------svsdidDVILVGgqtrmpmvqkkvaef------- 356 Escherichia coli
1Q18_A    227 kditeraladsctdcrralslfcvIXGRFGGNLalnl-----------gtfgGVFIAGgivprfleffkasgfraafedk 295 Escherichia coli
2HOE_A    277 fsslaeardsgdvrvkeyfddiarYFSIGLLNLihlf------------gisKIVIGGffkelgenflkkikievet--- 341 Thermotoga maritima
3ENH_A    215 ydagerledicyslqeyafsmlteITERALAHTnk----------------gEVMLVGgvaannrlremlkamce----- 273 Methanocaldococcus...
2QXL_A    291 mndvdvssqlsreeleelvkplleRVTEPVTKAlaqakl-------saeevdFVEIIGgttriptlkqsisea------- 356 baker's yeast
1OKJ_A    167 -----------------------eIVHERMQQLs-----------------gEWVTVGtgwqawpdlgkes--------- 197 Escherichia coli
3LM2_A    156 --------ayrekkgnakwqkrvqDVVERLSAAle---------------pdEVVIGGgnverlenlpp----------- 201 Agrobacterium tume...
2A6A_A    151 ---------------------sdeELEEITKEFs------------------PKIVLKddl------------------- 172 Thermotoga maritim...
NP_603687 287 deffsnkkykesktgkkildeyltYMGIILKNLlfty------------npkKLIISGelsqygnyllddilnivyek-- 352 Fusobacterium nucl...
NP_227848 247 ----------------gkeveeflSISKLVERMekfvelqgesldekfryikRLWFSGeknvketmeeflqhv------- 303 Thermotoga maritim...
Feature 1                                
1DKG_D    357 ------fgkeprkdvnpdeaVAIGAAV 377 Escherichia coli
1Q18_A    296 grfkeyvhdipvylivhdnpGLLGSGA 322 Escherichia coli
2HOE_A    342 -hllykhsvdxsfskvqepvIAFGAAV 367 Thermotoga maritima
3ENH_A    274 ----gqnvdfyvppkefcgdNGAMIAW 296 Methanocaldococcus jannaschii
2QXL_A    357 ------fgkplsttlnqdeaIAKGAAF 377 baker's yeast
1OKJ_A    198 --------glvlrdgevllpAAEDMLP 216 Escherichia coli
3LM2_A    202 ----------kcrrgdnaxaFEGGFRL 218 Agrobacterium tumefaciens str. C58
2A6A_A    173 ------------------liSPAVLVE 181 Thermotoga maritima MSB8
NP_603687 353 nhifyrgretisfsnfkgssSIIGAAL 379 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
NP_227848 304 -----avvlkniiyflnpgvIVLGGVV 325 Thermotoga maritima MSB8

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