Conserved Protein Domain Family
LOTUS_TDRD_OSKAR

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cd09972: LOTUS_TDRD_OSKAR 
The first LOTUS domain in Oskar and Tudor-containing proteins 5 and 7
The first LOTUS domain in Oskar and Tudor-containing proteins 5 and 7: The LOTUS containing proteins are germline-specific and are found in the nuage/polar granules of germ cells. Tudor-containing protein 5 and 7 belong to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 and TDRD7 are components of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. Oskar protein is a critical component of the pole plasm in the Drosophila oocyte, which is required for germ cell formation.The exact molecular function of LOTUS domain remains to be identified. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.
Statistics
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PSSM-Id: 193586
Aligned: 59 rows
Threshold Bit Score: 76.382
Created: 9-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ABR24798        4 VELVKKMLRAVLQSsk-hgVAMARLQGDYRALTGEMIPfrkfGHDTLESFLrSIPGVVRLers-itGEVMCFAgvc---- 77   zebrafish
EFR24911       16 VKAAVFVIRSLVASrk-eaSTVQSIMRDYKELEGEALPyrkyGYSTIEELLmKSGEFIIRrgngeqQERIYVKptr---- 90   Anopheles dar...
EDS44140       12 AKSAIAVMRSLIISek-gtSSLFRILGDFRKEEGHPLMykdfGYRSAAEFLeATGEFILReq---nGEVVVFVkps---- 83   southern hous...
EAT37713       13 AENAISVLRALVLSkk-gpSTVHGILADYRELEGGPLMykkfGYPNADEFLkSTGEFVVQsr---mGETVIFVkps---- 84   yellow fever ...
NP_001163213    7 LEYVAKVVRALITSak-ppVTLRSIVADYMEIEGEPIPfrrlGYSNDQELLkDSNQFNFHqs---gNQVFITAkyn---- 78   fruit fly
EDV35846       10 LANVARVVRALITSak-ppVGLHSVVRDYAGIEGEPMPfrrlGYMSVVDMLkDTDEFNFAks---gNDVVFQTrfgcipa 85   Drosophila an...
EDW61022      491 LKDVTIVVRSLITSlk-ppVSLRTIERDYMKEEHAPIPfrslGYRSTLELLeDTNAFSFQki---gDEIFVSAkpn---- 562  Drosophila vi...
EDY69148        8 FAVVTSEVRALIISgrkppVTLDDILKDYCEVVGEPLPfrrlGYRSAQDLLeATENFNFQty---gSTVYITAkss---- 80   Drosophila ps...
EDW79753      466 MNYVTSVIRALITSrk-ppVGLKAIINDYHDVEGQPLPfrelGYKSAQEMLtDTNAFTFQtv---wGEVHISAkyn---- 537  Drosophila wi...
P25158        153 YPDIDSEVRAILLShaqngITISSIKSEYRKLTGNPFP----LHDNVTDFLlTIPNVTAEcse-sgKRIFNLKasl---- 223  fruit fly
ABR24798       78 --------------------eetAHIAQLVARQK 91   zebrafish
EFR24911       91 ---------------------dgAHVREMVKAQK 103  Anopheles darlingi
EDS44140       84 --------------------eesSHIQKMIAAQK 97   southern house mosquito
EAT37713       85 --------------------kesAHILKMVAAQK 98   yellow fever mosquito
NP_001163213   79 --------------------antEHIVRMVRQQK 92   fruit fly
EDV35846       86 nlppptytselfiiisakysaktAHIASLVRGQK 119  Drosophila ananassae
EDW61022      563 --------------------pksAHIASMVRCQK 576  Drosophila virilis
EDY69148       81 --------------------aksDHIASMVRQQK 94   Drosophila pseudoobscura pseudoobscura
EDW79753      538 --------------------ektAHIASMVKKQK 551  Drosophila willistoni
P25158        224 ---------------------knGHLLDMVLNQK 236  fruit fly
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