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Report for CCDS22739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22739.1 Public Mus musculus 8 Snai3 23 108 98 CCDS HistoryNCBI Gene:30927Re-query CCDS DB by CCDS ID:22739.1Re-query CCDS DB by GeneID:30927See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006762.6 ENSMUSP00000006762.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006762.6Link to Ensembl Protein Viewer:ENSMUSP00000006762.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006762Re-query CCDS DB by Protein ID:ENSMUSP00000006762
Original member Current member NCBI NM_013914.3 NP_038942.1 Accepted alive Link to Nucleotide Sequence:NM_013914.3Link to Protein Sequence:NP_038942.1Re-query CCDS DB by Nucleotide ID:NM_013914Re-query CCDS DB by Protein ID:NP_038942Link to BLAST:NP_038942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038942.1 287 Q9QY31 287 100% 0 0

Chromosomal Locations for CCDS 22739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122454853 122455034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122456123 122456728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122460539 122460614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGCCGCGCTCCTTCCTGGTGAAAACGCACTCCAGTCACAGGGTCCCCAACTACGGGAAACTGGAGACAC
TGAGAGAAGCTAATGGCTCCTGCTCTGCCTGCAAGGAGTTGGCAGGATCCCGCCACCTGCCAGATGAGGA
GGCCCCTTGCAATCCCAGTGACCCCCTACAGCCTTGGGACAGTACCTCTGCCGTTGCCTGCATCTCCCTG
CCTCTTCTGCCGAATCACAGAGAAACTCTGGGAGTCTCTGGCCCAGAACCTCAGGAAACCAGCTGGGTGG
GCCCTCGGGCTGCCCAGGCCCCCAGTGTGACTCTTAAAGACAGCTTCACTCTACCCCCGCTGTTGGTGCT
GCCCACACGCTGGCCCCCAATCCTGGGCCCAGACGGAGCTCTAAATGAACATCTCAGGGCTGAGGGGACA
TCTCGAGTCCCAGGTAGCTTTGAGTGCATCCACTGCCACAGGCCGTATCATACGCTGGCTGGCCTGGCCA
GGCACCAGCAGCTGCACTGTCACCTGCCGACTGGGCGCGCCTTCACCTGCAGGTACTGTGACAAGGAGTA
TGCCAGCCTGGGTGCCCTCAAGATGCATATCCGCACCCACACGCTGCCCTGCATCTGTAAGGTGTGCGGC
AAGGCCTTCTCCAGACCCTGGCTGCTCCAGGGTCACATCCGCACCCATACAGGTGAGAAGCCCTATACCT
GTTCTCACTGCAGCAGGGCCTTCGCTGACCGCTCCAACCTGAGGGCTCACCTGCAGACTCACGTTGGTAC
CAAGAAGTACAGGTGCGCCGTGTGCCCCAAGGCCTTCTCCCGCATGTCTCTCTTGGCGCGGCATGAGGAA
GCCGGCTGCTGTCCTGGCCCCTAG

Translation (287 aa):
MPRSFLVKTHSSHRVPNYGKLETLREANGSCSACKELAGSRHLPDEEAPCNPSDPLQPWDSTSAVACISL
PLLPNHRETLGVSGPEPQETSWVGPRAAQAPSVTLKDSFTLPPLLVLPTRWPPILGPDGALNEHLRAEGT
SRVPGSFECIHCHRPYHTLAGLARHQQLHCHLPTGRAFTCRYCDKEYASLGALKMHIRTHTLPCICKVCG
KAFSRPWLLQGHIRTHTGEKPYTCSHCSRAFADRSNLRAHLQTHVGTKKYRCAVCPKAFSRMSLLARHEE
AGCCPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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