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Report for CCDS17741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17741.1 Public Mus musculus 3 Gstm5 23 108 98 CCDS HistoryNCBI Gene:14866Re-query CCDS DB by CCDS ID:17741.1Re-query CCDS DB by GeneID:14866See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004134.10 ENSMUSP00000004134.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004134.10Link to Ensembl Protein Viewer:ENSMUSP00000004134.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000004134Re-query CCDS DB by Protein ID:ENSMUSP00000004134
Original member NCBI NM_010360.2 NP_034490.1 Updated not alive Link to Nucleotide Sequence:NM_010360.2Link to Protein Sequence:NP_034490.1Re-query CCDS DB by Nucleotide ID:NM_010360Re-query CCDS DB by Protein ID:NP_034490
Current member NCBI NM_010360.3 NP_034490.1 Accepted alive Link to Nucleotide Sequence:NM_010360.3Link to Protein Sequence:NP_034490.1Re-query CCDS DB by Nucleotide ID:NM_010360Re-query CCDS DB by Protein ID:NP_034490Link to BLAST:NP_034490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034490.1 224 P48774 224 100% 0 0

Chromosomal Locations for CCDS 17741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107895954 107895998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107896298 107896373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107896626 107896690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107897288 107897369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107897462 107897562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107897967 107898062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107898166 107898276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107898451 107898549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCATCCAAGTCTATGGTTCTGGGTTACTGGGATATCCGCGGGCTGGCTCATGCTATCCGCATGCTTC
TGGAGTTTACTGATACCAGCTATGAGGAGAAACGGTACATCTGTGGGGAAGCTCCTGACTATGATAGAAG
CCAATGGCTGGACGTGAAATTCAAGCTAGATCTGGACTTTCCTAACCTGCCCTACCTCATGGACGGGAAG
AACAAGATCACCCAGAGTAACGCCATCCTGAGATACATCGCACGCAAGCACAACATGTGTGGTGACACTG
AAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCT
CTGCTACAATTCTAACCACGAAAACCTGAAGCCTCAGTACTTGGAACAGCTACCTGCACAGCTGAAACAA
TTCTCATTGTTCCTGGGGAAATTCACATGGTTTGCAGGAGAAAAGCTGACCTTTGTGGATTTTCTCACCT
ATGATGTCTTGGATCAGAACCGTATATTTGAGCCCAAGTGTCTGGATGAGTTCCCAAACCTGAAGGCTTT
CATGTGCCGTTTTGAGGCTTTGGAGAAGATTGCTGCATTCCTGCAGTCTGACCGCTTCTTCAAGATGCCA
ATCAATAACAAGATGGCCAAGTGGGGTAACAAGTGCTTATGCTGA

Translation (224 aa):
MSSKSMVLGYWDIRGLAHAIRMLLEFTDTSYEEKRYICGEAPDYDRSQWLDVKFKLDLDFPNLPYLMDGK
NKITQSNAILRYIARKHNMCGDTEEEKIRVDIMENQIMDFRMQLVRLCYNSNHENLKPQYLEQLPAQLKQ
FSLFLGKFTWFAGEKLTFVDFLTYDVLDQNRIFEPKCLDEFPNLKAFMCRFEALEKIAAFLQSDRFFKMP
INNKMAKWGNKCLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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