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Report for CCDS1476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1476.1 Public Homo sapiens 1 C4BPB 24 110 108 CCDS HistoryNCBI Gene:725Re-query CCDS DB by CCDS ID:1476.1Re-query CCDS DB by GeneID:725See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243611.9 ENSP00000243611.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000243611.9Link to Ensembl Protein Viewer:ENSP00000243611.5Re-query CCDS DB by Nucleotide ID:ENST00000243611Re-query CCDS DB by Protein ID:ENSP00000243611
Original member Current member EBI ENST00000367078.8 ENSP00000356045.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367078.8Link to Ensembl Protein Viewer:ENSP00000356045.3Re-query CCDS DB by Nucleotide ID:ENST00000367078Re-query CCDS DB by Protein ID:ENSP00000356045
Original member Current member EBI ENST00000391923.1 ENSP00000375790.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391923.1Link to Ensembl Protein Viewer:ENSP00000375790.1Re-query CCDS DB by Nucleotide ID:ENST00000391923Re-query CCDS DB by Protein ID:ENSP00000375790
Original member Current member NCBI NM_000716.3 NP_000707.1 Accepted alive Link to Nucleotide Sequence:NM_000716.3Link to Protein Sequence:NP_000707.1Re-query CCDS DB by Nucleotide ID:NM_000716Re-query CCDS DB by Protein ID:NP_000707Link to BLAST:NP_000707.1
Original member Current member NCBI NM_001017365.3 NP_001017365.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017365.3Link to Protein Sequence:NP_001017365.1Re-query CCDS DB by Nucleotide ID:NM_001017365Re-query CCDS DB by Protein ID:NP_001017365Link to BLAST:NP_001017365.1
Original member Current member NCBI NM_001017367.1 NP_001017367.1 Accepted alive Link to Nucleotide Sequence:NM_001017367.1Link to Protein Sequence:NP_001017367.1Re-query CCDS DB by Nucleotide ID:NM_001017367Re-query CCDS DB by Protein ID:NP_001017367Link to BLAST:NP_001017367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000707.1 252 P20851-1 252 100% 0 0
NP_001017365.1 252 P20851-1 252 100% 0 0
NP_001017367.1 252 P20851-1 252 100% 0 0

Chromosomal Locations for CCDS 1476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 207089532 207089589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207090308 207090481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207091644 207091820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207096522 207096615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207098150 207098264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207099789 207099929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGTTTTTTTGGTGTGCGTGCTGTCTTATGGTTGCGTGGCGAGTTTCTGCTTCAGATGCAGAGCACTGTC
CAGAGCTTCCTCCAGTGGACAATAGCATATTTGTCGCAAAGGAGGTGGAAGGACAGATTCTGGGGACTTA
CGTTTGTATCAAGGGCTACCACCTGGTAGGAAAGAAGACCCTTTTTTGCAATGCCTCTAAGGAGTGGGAT
AACACCACTACTGAGTGCCGCTTGGGCCACTGTCCTGATCCTGTGCTGGTGAATGGAGAGTTCAGTTCTT
CAGGGCCTGTGAATGTAAGTGACAAAATCACGTTTATGTGCAATGACCACTACATCCTCAAGGGCAGCAA
TCGGAGCCAGTGTCTAGAGGACCACACCTGGGCACCTCCCTTTCCCATCTGCAAAAGTAGGGACTGTGAC
CCTCCTGGGAATCCAGTTCATGGCTATTTTGAAGGAAATAACTTCACCTTAGGATCCACCATTAGTTATT
ACTGTGAAGACAGGTACTACTTAGTGGGCGTGCAGGAGCAGCAATGCGTTGATGGGGAGTGGAGCAGTGC
ACTTCCAGTCTGCAAGTTGATCCAGGAAGCTCCCAAACCAGAGTGTGAGAAGGCACTTCTTGCCTTTCAG
GAGAGTAAGAACCTCTGCGAAGCCATGGAGAACTTTATGCAACAATTAAAGGAAAGTGGCATGACAATGG
AGGAGCTAAAATATTCTCTGGAGCTGAAGAAAGCTGAGTTGAAGGCAAAATTGTTGTAA

Translation (252 aa):
MFFWCACCLMVAWRVSASDAEHCPELPPVDNSIFVAKEVEGQILGTYVCIKGYHLVGKKTLFCNASKEWD
NTTTECRLGHCPDPVLVNGEFSSSGPVNVSDKITFMCNDHYILKGSNRSQCLEDHTWAPPFPICKSRDCD
PPGNPVHGYFEGNNFTLGSTISYYCEDRYYLVGVQEQQCVDGEWSSALPVCKLIQEAPKPECEKALLAFQ
ESKNLCEAMENFMQQLKESGMTMEELKYSLELKKAELKAKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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